Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QDU35_RS02315 Genome accession   NZ_CP122987
Coordinates   473368..474477 (-) Length   369 a.a.
NCBI ID   WP_005320465.1    Uniprot ID   A2T1B0
Organism   Aeromonas salmonicida strain JNG     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468368..479477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDU35_RS02290 (QDU35_02290) - 468507..468737 (+) 231 WP_005320453.1 hypothetical protein -
  QDU35_RS02295 (QDU35_02295) brnQ 468813..470126 (-) 1314 WP_017412062.1 branched-chain amino acid transport system II carrier protein -
  QDU35_RS02300 (QDU35_02300) - 470312..471022 (-) 711 WP_017412061.1 methyltransferase -
  QDU35_RS02305 (QDU35_02305) srmB 471151..472374 (+) 1224 WP_005320462.1 ATP-dependent RNA helicase SrmB -
  QDU35_RS02310 (QDU35_02310) yaaA 472563..473336 (-) 774 WP_005320464.1 peroxide stress protein YaaA -
  QDU35_RS02315 (QDU35_02315) pilU 473368..474477 (-) 1110 WP_005320465.1 type IVa pilus ATPase TapU Machinery gene
  QDU35_RS02320 (QDU35_02320) pilT 474513..475547 (-) 1035 WP_280101106.1 type IVa pilus ATPase TapT Machinery gene
  QDU35_RS02325 (QDU35_02325) - 475587..476288 (+) 702 WP_005320467.1 YggS family pyridoxal phosphate-dependent enzyme -
  QDU35_RS02330 (QDU35_02330) proC 476379..477203 (+) 825 WP_017412059.1 pyrroline-5-carboxylate reductase -
  QDU35_RS02335 (QDU35_02335) - 477232..477783 (+) 552 WP_005320477.1 YggT family protein -
  QDU35_RS02340 (QDU35_02340) yggU 477783..478082 (+) 300 WP_005320479.1 DUF167 family protein YggU -
  QDU35_RS02345 (QDU35_02345) - 478101..478520 (+) 420 WP_005320482.1 DUF4426 domain-containing protein -
  QDU35_RS02350 (QDU35_02350) - 478589..478888 (-) 300 WP_011899099.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41039.07 Da        Isoelectric Point: 6.3717

>NTDB_id=817706 QDU35_RS02315 WP_005320465.1 473368..474477(-) (pilU) [Aeromonas salmonicida strain JNG]
MNLDALLAELVARKGSDLFITVGTPPTLKINGHLVSLGSEALDKQSALTLVRETLSPEHFERYIRTREGNYAIHREALGR
FRVSAFWQQELPGMVVRRIETRIPTFDELTLPPILQEVAMAKRGLVLFVGATGTGKSTTQAAMIGYRNQNADGHILTVED
PVEFVHQHGRSLITQREVGIDTESFDVALKSSLRQAPDVILIGEIRSQETMEFALQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQLLFDLSFNLRAIVAQQLVPSLDGRRRFAAFEVLLNTPLITDIIRKGEVHRLKEVMTKSTELGMQTFDQA
LFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQMGAGTLDNVTLDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=817706 QDU35_RS02315 WP_005320465.1 473368..474477(-) (pilU) [Aeromonas salmonicida strain JNG]
ATGAATCTGGATGCCCTGTTGGCCGAACTGGTCGCACGCAAAGGCTCGGATCTGTTCATCACGGTTGGGACGCCCCCCAC
CCTCAAGATCAACGGGCATCTGGTCTCCCTCGGCAGCGAAGCGCTCGACAAGCAGAGCGCGCTGACCCTGGTCAGGGAGA
CGCTCAGCCCTGAGCATTTCGAGCGCTACATCCGCACCAGGGAGGGCAACTACGCCATCCACCGCGAGGCACTGGGACGC
TTTCGGGTGAGTGCCTTCTGGCAGCAGGAGCTGCCGGGCATGGTGGTGCGCCGTATCGAGACCCGCATTCCAACCTTCGA
CGAACTGACCCTGCCGCCCATCTTGCAGGAGGTGGCCATGGCCAAGCGCGGCCTGGTGCTGTTCGTCGGCGCCACCGGAA
CGGGCAAATCCACCACTCAGGCAGCCATGATCGGCTATCGAAACCAGAATGCGGATGGCCATATCCTGACGGTGGAAGAT
CCGGTGGAGTTCGTGCATCAGCACGGCCGCAGTCTGATCACCCAGCGGGAAGTGGGCATAGATACGGAATCATTCGATGT
GGCGCTGAAGAGCTCCCTGCGCCAGGCCCCTGACGTTATCCTCATCGGCGAGATCCGAAGCCAGGAAACCATGGAGTTCG
CACTGCAATTTGCCGAGACCGGCCATCTTTGCCTAGCGACCCTTCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTGCATCTGGTGCCGCAGGAGAAACACCGTCAGTTACTGTTCGATCTCTCCTTCAACCTGCGCGCCATCGTCGCCCAGCA
ACTGGTGCCAAGCCTGGATGGCCGCCGCCGCTTCGCGGCGTTTGAAGTGCTGCTCAACACGCCGCTCATCACGGATATCA
TCCGCAAAGGCGAGGTTCATCGCCTCAAAGAGGTGATGACCAAATCCACCGAGCTTGGCATGCAGACCTTCGATCAGGCG
CTGTTTACCCTGTTTTGTGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCGGCCAACGACCTGCGACT
GCTGATCAAGCTGTCCGGCCGTGAGCAGATGGGTGCAGGCACACTCGACAACGTCACCCTGGATGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(115-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2T1B0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

59.511

99.729

0.593
  pilU Pseudomonas stutzeri DSM 10701

59.544

95.122

0.566
  pilU Acinetobacter baylyi ADP1

57.79

95.664

0.553
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.296

89.702

0.379
  pilT Legionella pneumophila strain Lp02

39.942

92.954

0.371
  pilT Legionella pneumophila strain ERS1305867

39.942

92.954

0.371
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.419

90.515

0.366
  pilT Vibrio cholerae strain A1552

40.419

90.515

0.366
  pilT Acinetobacter baylyi ADP1

39.003

92.412

0.36