Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QBS18_RS17695 Genome accession   NZ_CP121856
Coordinates   3772247..3773281 (-) Length   344 a.a.
NCBI ID   WP_005340354.1    Uniprot ID   -
Organism   Aeromonas veronii strain LOID 16013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3767247..3778281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS18_RS17665 glnK 3767825..3768163 (-) 339 WP_005341406.1 P-II family nitrogen regulator -
  QBS18_RS17670 arfB 3768365..3768781 (+) 417 WP_111806077.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  QBS18_RS17675 - 3768814..3769305 (+) 492 WP_279499021.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QBS18_RS17680 - 3769665..3770090 (-) 426 WP_005340360.1 hypothetical protein -
  QBS18_RS17685 yaaA 3770285..3771058 (-) 774 WP_279499020.1 peroxide stress protein YaaA -
  QBS18_RS17690 pilU 3771106..3772218 (-) 1113 WP_279507722.1 type IVa pilus ATPase TapU Machinery gene
  QBS18_RS17695 pilT 3772247..3773281 (-) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  QBS18_RS17700 - 3773321..3774022 (+) 702 WP_279499019.1 YggS family pyridoxal phosphate-dependent enzyme -
  QBS18_RS17705 proC 3774165..3774989 (+) 825 WP_279499018.1 pyrroline-5-carboxylate reductase -
  QBS18_RS17710 - 3775001..3775552 (+) 552 WP_005341416.1 YggT family protein -
  QBS18_RS17715 yggU 3775552..3775854 (+) 303 WP_120414749.1 DUF167 family protein YggU -
  QBS18_RS17720 - 3775898..3776317 (+) 420 WP_120414748.1 DUF4426 domain-containing protein -
  QBS18_RS17725 - 3776419..3777615 (-) 1197 WP_005357935.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38273.03 Da        Isoelectric Point: 6.7440

>NTDB_id=814834 QBS18_RS17695 WP_005340354.1 3772247..3773281(-) (pilT) [Aeromonas veronii strain LOID 16013]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=814834 QBS18_RS17695 WP_005340354.1 3772247..3773281(-) (pilT) [Aeromonas veronii strain LOID 16013]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGTGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACATCGGGAAGTGCATGCCCTCATTTACGACA
TCATGAACGACCATCAGCGCAAGGAGCTGGAGGAGAACTTCGAGGTCGACTTCTCGTTCGAGGTGCCCAATCTGGCACGT
TTCCGGGTTAACGCCTTCCAGCAGGCGCGCGGTTCGGGCGCGGTATTTCGTACCATCCCCAGCACTGTGCTGAGCCTCGA
AGATCTCGATGCGCCGGAGATCTTCCGCAAGATTGCCGAGTTCCCGCGGGGTCTGGTGTTGGTAACCGGCCCGACCGGTT
CCGGTAAGTCGACCACCCTGGCGGCTATGGTCAATTACATCAACGAGAACTTCCATCACCACATCCTCACCATTGAAGAC
CCCATCGAATTCGTCCACGAGAACAAGCGCTGTCTGGTAAACCAGCGGGAAGTGCACCGGGATACCAAGAGCTTCAGCAA
CGCCCTACGCTCGGCACTGCGGGAAGACCCGGACATCATTCTGGTGGGCGAGATGCGCGACCTTGAGACCATTCGTTTGG
CCATGACCGCCGCCGAAACTGGCCATCTGGTGTTTGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGTATC
ATCGACGTCTTCCCCGGCGCGGAGAAGGACATGGTGCGCTCCATGCTCTCAGAATCCCTGCGGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGTATTGGCGGTGGCCGGGTGGCGGCTCACGAGATCATGATGGGCATTCCGGCGGTGCGTAACCTGATCC
GGGAGGACAAGATTGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGTCGTGGCGTGGTGGCATCCCTCGATGCCAAGGCCAAGGCTGTTGATCCCAACAGCATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.551

99.709

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.163

100

0.762
  pilT Pseudomonas aeruginosa PAK

75.291

100

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.964

97.965

0.744
  pilT Vibrio cholerae strain A1552

75.964

97.965

0.744
  pilT Legionella pneumophila strain Lp02

72.941

98.837

0.721
  pilT Legionella pneumophila strain ERS1305867

72.941

98.837

0.721
  pilT Neisseria meningitidis 8013

69.855

100

0.701
  pilT Neisseria gonorrhoeae MS11

69.565

100

0.698
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407