Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Thiosp_RS17920 Genome accession   NZ_CP121473
Coordinates   3962925..3964163 (-) Length   412 a.a.
NCBI ID   WP_201067779.1    Uniprot ID   -
Organism   Thiorhodovibrio litoralis strain 06511     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3957925..3969163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Thiosp_RS17895 (Thiosp_03621) - 3957955..3959304 (+) 1350 WP_201067774.1 glycoside hydrolase family 57 -
  Thiosp_RS17900 (Thiosp_03622) - 3959301..3960767 (+) 1467 WP_201067775.1 glycosyl hydrolase family 57 -
  Thiosp_RS17905 (Thiosp_03623) - 3961024..3961209 (+) 186 WP_201067776.1 hypothetical protein -
  Thiosp_RS17910 (Thiosp_03624) coaE 3961311..3961958 (-) 648 WP_201067777.1 dephospho-CoA kinase -
  Thiosp_RS17915 (Thiosp_03625) pilD 3961959..3962867 (-) 909 WP_201067778.1 A24 family peptidase Machinery gene
  Thiosp_RS17920 (Thiosp_03626) pilC 3962925..3964163 (-) 1239 WP_201067779.1 type II secretion system F family protein Machinery gene
  Thiosp_RS17925 (Thiosp_03627) pilB 3964169..3965881 (-) 1713 WP_201067780.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Thiosp_RS17930 (Thiosp_03628) - 3966044..3966877 (-) 834 WP_201067794.1 NYN domain-containing protein -
  Thiosp_RS17935 (Thiosp_03629) acs 3967026..3968972 (-) 1947 WP_201067781.1 acetate--CoA ligase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44374.22 Da        Isoelectric Point: 9.8651

>NTDB_id=812346 Thiosp_RS17920 WP_201067779.1 3962925..3964163(-) (pilC) [Thiorhodovibrio litoralis strain 06511]
MAVAVTKKAKVEKSHNFAWEGLDKRGSKVKGETRGASIALIRADLRRQGVNPTKVRKKAEPLLGGGKKKITAGDISVFTR
QLATMMSAGVPLVQSFEIVGRGHENPSMQELILSIKNDIESGSAMAVALSKHPKYFDDLVCNLVAAGEQAGVLDDLLDKI
ATYKEKTESIKGKIKKALFYPISVIVVAIVVTAVLLVFVIPQFKELFDSFGADLPAFTLMVIGLSDALQKWWWAVAIGLG
AAGYSIAKLHEKSRKFRELVDRASLKIPVIGSILNKAAIARFARTLSTMFAAGVPLVEALGSVSGATGNIVYTDAVLKMR
EEVATGQNLQLAMRQRNLFPHMVIQMTSIGEESGSLDAMLGKVADFYEEEVDNAVDALSSLLEPMIMVVIGGLVGSLIVA
MYLPIFKLAAVV

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=812346 Thiosp_RS17920 WP_201067779.1 3962925..3964163(-) (pilC) [Thiorhodovibrio litoralis strain 06511]
ATGGCAGTCGCCGTAACAAAGAAAGCTAAGGTCGAGAAAAGCCACAACTTCGCCTGGGAAGGCCTTGATAAGCGCGGGTC
CAAAGTCAAGGGTGAAACCCGTGGCGCCAGTATTGCATTGATTCGCGCCGATCTGCGCCGGCAGGGTGTGAATCCAACCA
AGGTGCGCAAAAAGGCCGAACCACTTCTGGGCGGGGGCAAGAAGAAAATCACCGCCGGGGATATTTCGGTCTTTACCCGG
CAGTTGGCCACCATGATGAGTGCTGGTGTGCCACTTGTGCAGTCTTTTGAGATTGTTGGCCGCGGCCATGAAAACCCATC
GATGCAAGAATTGATTCTCAGCATCAAAAACGACATCGAAAGCGGCTCCGCGATGGCAGTCGCCTTGTCCAAACACCCAA
AATATTTTGACGATCTGGTCTGCAACTTGGTCGCCGCGGGTGAGCAAGCCGGTGTGCTTGACGATCTTCTCGACAAAATT
GCGACCTATAAAGAAAAGACCGAATCCATCAAGGGTAAGATCAAAAAGGCTCTCTTTTATCCGATTTCGGTTATCGTGGT
CGCAATAGTCGTTACAGCGGTATTGCTGGTATTTGTCATCCCTCAATTCAAAGAGCTTTTTGATAGTTTTGGGGCTGACT
TGCCTGCCTTTACGTTAATGGTAATCGGGCTTTCAGATGCTTTGCAGAAATGGTGGTGGGCCGTTGCGATAGGGCTCGGA
GCGGCAGGTTACAGTATCGCTAAATTGCACGAAAAATCGCGCAAGTTCCGTGAGTTAGTTGATCGTGCGTCGCTTAAGAT
CCCGGTTATCGGATCCATCCTAAATAAGGCGGCGATTGCCCGTTTCGCCCGCACACTTTCGACCATGTTTGCGGCGGGCG
TGCCTTTGGTCGAAGCTTTGGGTTCCGTGTCCGGCGCCACAGGAAATATCGTCTACACAGATGCTGTTCTGAAAATGCGC
GAGGAGGTCGCGACCGGTCAGAATTTGCAGCTGGCCATGCGCCAGCGCAACCTGTTTCCGCACATGGTGATTCAGATGAC
TTCCATTGGTGAGGAATCCGGCTCTTTGGACGCAATGCTGGGAAAAGTTGCGGATTTTTACGAAGAAGAAGTGGATAACG
CAGTCGACGCCCTAAGTAGTCTGCTCGAGCCCATGATCATGGTGGTCATCGGCGGTTTGGTGGGCAGCTTGATCGTTGCG
ATGTATCTGCCAATCTTTAAGTTGGCTGCCGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.561

97.816

0.573
  pilC Legionella pneumophila strain ERS1305867

59.194

96.359

0.57
  pilC Acinetobacter baumannii D1279779

55.198

98.058

0.541
  pilC Acinetobacter baylyi ADP1

54.156

96.359

0.522
  pilG Neisseria meningitidis 44/76-A

48.756

97.573

0.476
  pilG Neisseria gonorrhoeae MS11

48.756

97.573

0.476
  pilC Vibrio cholerae strain A1552

40.852

96.845

0.396
  pilC Vibrio campbellii strain DS40M4

40.806

96.359

0.393