Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OCUAC_RS13615 Genome accession   NZ_AP023077
Coordinates   2850638..2851675 (+) Length   345 a.a.
NCBI ID   WP_072689322.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2845638..2856675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS13605 - 2846021..2849617 (+) 3597 WP_002061337.1 AAA family ATPase -
  OCUAC_RS13610 - 2849819..2850511 (-) 693 WP_001108503.1 YggS family pyridoxal phosphate-dependent enzyme -
  OCUAC_RS13615 pilT 2850638..2851675 (+) 1038 WP_072689322.1 type IV pilus twitching motility protein PilT Machinery gene
  OCUAC_RS13620 pilU 2851703..2852821 (+) 1119 WP_000347034.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OCUAC_RS13625 fur 2852891..2853328 (-) 438 WP_001122847.1 ferric iron uptake transcriptional regulator -
  OCUAC_RS13630 - 2853440..2853838 (+) 399 WP_001170994.1 outer membrane protein assembly factor BamE -
  OCUAC_RS13635 - 2853893..2854216 (-) 324 WP_000442589.1 RnfH family protein -
  OCUAC_RS13640 - 2854216..2855283 (-) 1068 WP_029749783.1 membrane protein -
  OCUAC_RS13645 - 2855436..2855891 (-) 456 WP_000782976.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38340.97 Da        Isoelectric Point: 6.7271

>NTDB_id=81176 OCUAC_RS13615 WP_072689322.1 2850638..2851675(+) (pilT) [Acinetobacter baumannii strain OCU_Ac16a]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMLDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGVNHGMTTLDQSL
KGLVARGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=81176 OCUAC_RS13615 WP_072689322.1 2850638..2851675(+) (pilT) [Acinetobacter baumannii strain OCU_Ac16a]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACATCTTTCTGCTGGCATGCCACCAAT
GATTCGTGTTGACGGTGAAGTTCGTCGTATTAACTTACCAGCTCTAGAACATAAAGATGTCCACCGTTTGGTCTACGACA
TCATGAATGATAAACAGCGCCGTGACTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCTAATGTTGCACGT
TTCCGTGTTAACGCATTTAACCAAAACCGTGGTGCTGGTGCAGTCTTTCGTACCATTCCATCTAAAGTCCTCACCATGGA
AGATCTAGGTCTAGGGCAAATCTTTAAAGATATTTGCGACTATCCTCGTGGTATTGTACTGGTGACGGGTCCAACAGGTT
CGGGTAAATCAACTACGCTTGCAGCGATGCTCGATTATATTAACGAAAACCGCTATGACCATATTTTAACGGTGGAAGAC
CCAATCGAATTTGTACACCAGTCTAAGAAATGTCTCATTAACCAGCGTGAAGTGCATCGTGACACACACGGCTTTAATGA
AGCACTTCGCTCAGCACTGCGTGAAGACCCTGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAAACTATTCGCTTGG
CATTAACCGCTGCCGAAACAGGTCACTTGGTGTTTGGTACACTCCACACCACGTCAGCTGCAAAAACTATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCAGAATCTTTACAAGCGGTTATTTCACAAAC
CCTGCTTAAAAAGAATGGCGGTGGCCGTGTCGCAGCCCATGAAATTATGATTGGTATTCCGGCTATTCGTAATTTAATTC
GTGAAAACAAAGTCGCGCAAATGTACTCAGCCATTCAAACTGGTGTCAATCATGGCATGACCACACTAGACCAAAGCTTA
AAAGGCTTAGTCGCTCGCGGTGTGATTAGTCCACAAACCGCACGTACTGCGGCAAAACAGCCTGAATCATTCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii strain A118

99.71

100

0.997
  pilT Acinetobacter baumannii D1279779

99.71

100

0.997
  pilT Acinetobacter nosocomialis M2

99.42

100

0.994
  pilT Acinetobacter baylyi ADP1

88.663

99.71

0.884
  pilT Pseudomonas aeruginosa PAK

84.302

99.71

0.841
  pilT Pseudomonas stutzeri DSM 10701

84.012

99.71

0.838
  pilT Legionella pneumophila strain Lp02

75.581

99.71

0.754
  pilT Legionella pneumophila strain ERS1305867

75.581

99.71

0.754
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.429

97.391

0.696
  pilT Vibrio cholerae strain A1552

71.429

97.391

0.696
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.884

100

0.519
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.101

0.394
  pilU Acinetobacter baylyi ADP1

38.728

100

0.388

Multiple sequence alignment