Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   P5V12_RS20615 Genome accession   NZ_CP120416
Coordinates   4791490..4792524 (+) Length   344 a.a.
NCBI ID   WP_316954968.1    Uniprot ID   A0AA96HN94
Organism   Teredinibacter sp. KSP-S5-2     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4786490..4797524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5V12_RS20580 (P5V12_20580) - 4786667..4787116 (-) 450 WP_316954962.1 DUF4426 domain-containing protein -
  P5V12_RS20585 (P5V12_20585) metW 4787113..4787721 (-) 609 WP_316954963.1 methionine biosynthesis protein MetW -
  P5V12_RS20590 (P5V12_20590) - 4787724..4788902 (-) 1179 WP_316954964.1 homoserine O-succinyltransferase MetX -
  P5V12_RS20595 (P5V12_20595) - 4788936..4789229 (-) 294 WP_316954965.1 DUF167 family protein -
  P5V12_RS20600 (P5V12_20600) - 4789233..4789823 (-) 591 WP_316954966.1 YggT family protein -
  P5V12_RS20605 (P5V12_20605) proC 4789832..4790611 (-) 780 WP_316957460.1 pyrroline-5-carboxylate reductase -
  P5V12_RS20610 (P5V12_20610) - 4790723..4791400 (-) 678 WP_316954967.1 YggS family pyridoxal phosphate-dependent enzyme -
  P5V12_RS20615 (P5V12_20615) pilT 4791490..4792524 (+) 1035 WP_316954968.1 type IV pilus twitching motility protein PilT Machinery gene
  P5V12_RS20620 (P5V12_20620) pilU 4792673..4793815 (+) 1143 WP_316954969.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  P5V12_RS20625 (P5V12_20625) - 4794020..4794343 (+) 324 WP_316954970.1 hypothetical protein -
  P5V12_RS20630 (P5V12_20630) ruvX 4794356..4794790 (-) 435 WP_316954971.1 Holliday junction resolvase RuvX -
  P5V12_RS20635 (P5V12_20635) - 4794805..4795365 (-) 561 WP_316954972.1 YqgE/AlgH family protein -
  P5V12_RS20640 (P5V12_20640) - 4795523..4796398 (-) 876 WP_316954973.1 energy transducer TonB -
  P5V12_RS20645 (P5V12_20645) gshB 4796413..4797336 (-) 924 WP_316957461.1 glutathione synthase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38231.87 Da        Isoelectric Point: 6.5790

>NTDB_id=805531 P5V12_RS20615 WP_316954968.1 4791490..4792524(+) (pilT) [Teredinibacter sp. KSP-S5-2]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPMEHKQVHSLIYEIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGQVFRDVSSVPRGLVLVTGPTGSGKSTTLAAMIDYINENKYHHVLTIED
PIEFVHESKKCLVNQREVHRDTHGFAEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPANEKAMVRSMLSESLEAVVSQTLMKKNGGGRVAAHEIMRGTSAIRNLIREDKVAQMYSAIQTGGSVGMQTMDQCL
ADLVERRIINRDVAKEKAKMPENF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=805531 P5V12_RS20615 WP_316954968.1 4791490..4792524(+) (pilT) [Teredinibacter sp. KSP-S5-2]
ATGGATATTACTGAACTCTTGGCATTCTCGGCAAAACAAGGTGCGTCGGACCTGCATTTATCAGCGGGCTTACCTCCCAT
GATTCGTGTCGATGGGGACGTGCGTAGGATCAACCTGCCGCCGATGGAGCACAAGCAAGTGCATTCCTTGATTTATGAGA
TTATGAATGACAAGCAGCGCAAGGATTTCGAAGAGTTTCTCGAAACGGACTTTTCCTTTGAGGTTCCCGGCGTAGCGCGT
TTCAGGGTGAACGCCTTTAACCAAAACCGTGGTGCTGGTGCGGTGTTTCGTACCATTCCTTCAAAAGTATTGACCATGGA
AGAGCTGGGCATGGGGCAGGTGTTTCGCGATGTGTCCTCCGTACCTAGAGGGTTGGTTTTGGTGACCGGGCCGACCGGTT
CGGGTAAGTCCACGACTCTGGCAGCGATGATCGATTACATCAATGAAAACAAGTATCACCACGTTCTAACGATTGAAGAC
CCGATCGAATTTGTGCACGAAAGTAAAAAGTGTTTGGTTAACCAGCGTGAGGTTCACCGTGATACCCACGGCTTTGCTGA
AGCTCTGCGATCCGCACTGCGGGAAGACCCGGATATTATTCTGGTGGGTGAGATGCGGGACTTGGAGACCATTCGATTGG
CATTGACGGCCGCAGAAACCGGTCACTTGGTATTCGGTACCCTGCATACCACCTCCGCAGCAAAAACCATTGACCGTGTG
GTGGACGTATTCCCTGCGAATGAAAAAGCCATGGTGCGCTCCATGTTGTCGGAGTCGTTAGAGGCGGTTGTTTCGCAAAC
TTTGATGAAGAAAAATGGTGGTGGCCGGGTGGCTGCCCACGAAATCATGCGCGGAACCTCGGCAATTCGAAACCTGATTC
GGGAAGATAAAGTGGCACAAATGTATTCTGCTATTCAGACCGGTGGTTCAGTTGGCATGCAGACAATGGATCAATGCTTG
GCCGATCTGGTGGAAAGACGAATTATTAATCGGGATGTGGCCAAAGAAAAAGCCAAAATGCCCGAAAACTTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

89.535

100

0.895
  pilT Pseudomonas stutzeri DSM 10701

88.372

100

0.884
  pilT Acinetobacter nosocomialis M2

81.977

100

0.82
  pilT Acinetobacter baumannii D1279779

81.977

100

0.82
  pilT Acinetobacter baumannii strain A118

81.977

100

0.82
  pilT Acinetobacter baylyi ADP1

79.07

100

0.791
  pilT Legionella pneumophila strain Lp02

73.964

98.256

0.727
  pilT Legionella pneumophila strain ERS1305867

73.964

98.256

0.727
  pilT Neisseria meningitidis 8013

66.377

100

0.666
  pilT Neisseria gonorrhoeae MS11

65.797

100

0.66
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.471

98.837

0.657
  pilT Vibrio cholerae strain A1552

66.471

98.837

0.657
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.754

100

0.529
  pilU Pseudomonas stutzeri DSM 10701

41.358

94.186

0.39
  pilU Vibrio cholerae strain A1552

40.615

94.477

0.384
  pilU Acinetobacter baylyi ADP1

37.861

100

0.381