Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   P3T93_RS06420 Genome accession   NZ_CP119997
Coordinates   1287502..1287864 (+) Length   120 a.a.
NCBI ID   WP_323701972.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282502..1292864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS06395 (P3T93_06395) - 1283348..1283548 (+) 201 WP_103211250.1 YqgQ family protein -
  P3T93_RS06400 (P3T93_06400) - 1283857..1284843 (+) 987 WP_019469350.1 glucokinase -
  P3T93_RS06405 (P3T93_06405) - 1284843..1285166 (+) 324 WP_019469349.1 MTH1187 family thiamine-binding protein -
  P3T93_RS06410 (P3T93_06410) - 1285169..1285792 (+) 624 WP_019469348.1 MBL fold metallo-hydrolase -
  P3T93_RS06415 (P3T93_06415) comGA 1285852..1286826 (+) 975 WP_019469347.1 competence type IV pilus ATPase ComGA Machinery gene
  P3T93_RS06420 (P3T93_06425) comGB 1287502..1287864 (+) 363 WP_323701972.1 type II secretion system F family protein Machinery gene
  P3T93_RS06425 (P3T93_06430) comGC 1287884..1288201 (+) 318 WP_040030035.1 competence type IV pilus major pilin ComGC Machinery gene
  P3T93_RS06430 (P3T93_06435) - 1288191..1288553 (+) 363 WP_323701245.1 competence protein -
  P3T93_RS06435 (P3T93_06440) - 1288883..1289326 (+) 444 WP_019469343.1 ComGF family competence protein -
  P3T93_RS06440 (P3T93_06445) - 1289491..1290015 (+) 525 WP_019469341.1 shikimate kinase -
  P3T93_RS06445 (P3T93_06450) gcvT 1290172..1291263 (+) 1092 WP_323701249.1 glycine cleavage system aminomethyltransferase GcvT -
  P3T93_RS06450 (P3T93_06455) gcvPA 1291281..1292633 (+) 1353 WP_019469339.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 14010.86 Da        Isoelectric Point: 6.9774

>NTDB_id=801433 P3T93_RS06420 WP_323701972.1 1287502..1287864(+) (comGB) [Staphylococcus cohnii strain Dog166]
MTLQSIVDIYSKQKNDTYLIYLDRKLATGTQSGHKLSEILKKISCFEEGLINFIEEGEKTGKLDIELKLYSEIIFTKIER
YLQLIIKFIQPIIFIMLGILIISLYLVIMLPMFDLMQTIK

Nucleotide


Download         Length: 363 bp        

>NTDB_id=801433 P3T93_RS06420 WP_323701972.1 1287502..1287864(+) (comGB) [Staphylococcus cohnii strain Dog166]
GTGACCTTACAATCAATCGTTGATATATATTCTAAGCAAAAAAACGACACATATTTAATTTACCTTGATCGAAAATTAGC
AACAGGTACACAAAGTGGTCATAAGTTAAGTGAGATTTTAAAAAAGATTTCTTGTTTTGAAGAAGGGTTGATTAATTTTA
TTGAGGAGGGTGAAAAGACAGGGAAACTAGACATAGAATTAAAATTATATAGCGAAATCATATTTACAAAAATTGAACGG
TATTTACAATTAATAATTAAATTTATACAACCAATTATATTTATCATGCTAGGGATACTGATCATTTCCTTATATTTAGT
CATAATGTTACCTATGTTCGATCTAATGCAAACGATTAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

48.333

100

0.483
  comGB Staphylococcus aureus N315

48.333

100

0.483