Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P3T93_RS06425 Genome accession   NZ_CP119997
Coordinates   1287884..1288201 (+) Length   105 a.a.
NCBI ID   WP_040030035.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282884..1293201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS06395 (P3T93_06395) - 1283348..1283548 (+) 201 WP_103211250.1 YqgQ family protein -
  P3T93_RS06400 (P3T93_06400) - 1283857..1284843 (+) 987 WP_019469350.1 glucokinase -
  P3T93_RS06405 (P3T93_06405) - 1284843..1285166 (+) 324 WP_019469349.1 MTH1187 family thiamine-binding protein -
  P3T93_RS06410 (P3T93_06410) - 1285169..1285792 (+) 624 WP_019469348.1 MBL fold metallo-hydrolase -
  P3T93_RS06415 (P3T93_06415) comGA 1285852..1286826 (+) 975 WP_019469347.1 competence type IV pilus ATPase ComGA Machinery gene
  P3T93_RS06420 (P3T93_06425) comGB 1287502..1287864 (+) 363 WP_323701972.1 type II secretion system F family protein Machinery gene
  P3T93_RS06425 (P3T93_06430) comGC 1287884..1288201 (+) 318 WP_040030035.1 competence type IV pilus major pilin ComGC Machinery gene
  P3T93_RS06430 (P3T93_06435) - 1288191..1288553 (+) 363 WP_323701245.1 competence protein -
  P3T93_RS06435 (P3T93_06440) - 1288883..1289326 (+) 444 WP_019469343.1 ComGF family competence protein -
  P3T93_RS06440 (P3T93_06445) - 1289491..1290015 (+) 525 WP_019469341.1 shikimate kinase -
  P3T93_RS06445 (P3T93_06450) gcvT 1290172..1291263 (+) 1092 WP_323701249.1 glycine cleavage system aminomethyltransferase GcvT -
  P3T93_RS06450 (P3T93_06455) gcvPA 1291281..1292633 (+) 1353 WP_019469339.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11796.91 Da        Isoelectric Point: 9.1680

>NTDB_id=801434 P3T93_RS06425 WP_040030035.1 1287884..1288201(+) (comGC) [Staphylococcus cohnii strain Dog166]
MNKIKQSFNKRAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQSTGCEAQIKMIESQVEEFTLKHNKKPQSIDELIADG
YIKENQKKCKSGSTITINNGEVIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=801434 P3T93_RS06425 WP_040030035.1 1287884..1288201(+) (comGC) [Staphylococcus cohnii strain Dog166]
ATGAACAAAATAAAACAGTCTTTTAATAAGCGTGCATTTACTTTAATTGAAATGCTCCTTGTATTATTAATTATAAGCTT
ATTATTGATTTTGATTATACCCAATATTGCAAAACAATCTTCACATATTCAAAGTACTGGTTGCGAAGCACAAATAAAAA
TGATTGAAAGTCAAGTTGAAGAATTTACTCTAAAACATAATAAAAAACCACAGTCTATAGATGAACTGATTGCGGATGGC
TATATCAAAGAAAATCAAAAAAAATGTAAATCAGGATCAACCATTACTATAAATAACGGTGAAGTAATTGCAAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

75.789

90.476

0.686
  comGC Staphylococcus aureus N315

75.789

90.476

0.686
  comYC Streptococcus mutans UA159

46.512

81.905

0.381
  comYC Streptococcus mutans UA140

46.512

81.905

0.381
  comGC/cglC Streptococcus mitis NCTC 12261

42.105

90.476

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

42.105

90.476

0.381
  comYC Streptococcus gordonii str. Challis substr. CH1

44.186

81.905

0.362
  comGC/cglC Streptococcus mitis SK321

48.101

75.238

0.362