Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | P3S72_RS28595 | Genome accession | NZ_CP119772 |
| Coordinates | 6156881..6157915 (-) | Length | 344 a.a. |
| NCBI ID | WP_276195295.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. D3 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6151881..6162915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P3S72_RS28565 (P3S72_28560) | ruvX | 6151936..6152373 (+) | 438 | WP_276195290.1 | Holliday junction resolvase RuvX | - |
| P3S72_RS28570 (P3S72_28565) | pyrR | 6152458..6152964 (+) | 507 | WP_276195291.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
| P3S72_RS28575 (P3S72_28570) | - | 6152989..6153993 (+) | 1005 | WP_276195292.1 | aspartate carbamoyltransferase catalytic subunit | - |
| P3S72_RS28580 (P3S72_28575) | - | 6153990..6155261 (+) | 1272 | WP_276195293.1 | dihydroorotase | - |
| P3S72_RS28585 (P3S72_28580) | - | 6155418..6155846 (-) | 429 | WP_017845004.1 | NINE protein | - |
| P3S72_RS28590 (P3S72_28585) | - | 6156097..6156729 (+) | 633 | WP_276195294.1 | C40 family peptidase | - |
| P3S72_RS28595 (P3S72_28590) | pilT | 6156881..6157915 (-) | 1035 | WP_276195295.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| P3S72_RS28600 (P3S72_28595) | - | 6157973..6158659 (+) | 687 | WP_253399929.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| P3S72_RS28605 (P3S72_28600) | proC | 6158693..6159511 (+) | 819 | WP_276195296.1 | pyrroline-5-carboxylate reductase | - |
| P3S72_RS28610 (P3S72_28605) | - | 6159551..6160138 (+) | 588 | WP_247407939.1 | YggT family protein | - |
| P3S72_RS28615 (P3S72_28610) | - | 6160243..6161382 (+) | 1140 | WP_247407940.1 | homoserine O-acetyltransferase | - |
| P3S72_RS28620 (P3S72_28615) | metW | 6161390..6162010 (+) | 621 | WP_247407941.1 | methionine biosynthesis protein MetW | - |
| P3S72_RS28625 (P3S72_28620) | - | 6162032..6162466 (+) | 435 | WP_276195297.1 | DUF4426 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 37371.14 Da Isoelectric Point: 7.7176
>NTDB_id=801123 P3S72_RS28595 WP_276195295.1 6156881..6157915(-) (pilT) [Pseudomonas sp. D3]
MDITELLTQSVHRGASDLHLSAGLAPMLRVDGEVWPLDGPVLSATHVADLLSPLLNRYQQKDFETSLETDFAFELPGVGR
FRVNVFQQARGMGAVFRSIPAQVQSLESLGLGAVFQRIAQLPRGLVLVTGPTGSGKSTTLAAMVDHLNQHRRQHILTLED
PIEFIHLPNRSLINQRQVHRDTQSFSAALRSALRQDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTASAAKTVDRL
VDVFPAGEKPMVRSMLSESLQAVVSQVLVKKIGGGRVAAHEVMLSTPAIRNLIREDKLAQMVSAMQTGGALGMKTLDMSL
KALVTEGVISREAAREKARVPTDI
MDITELLTQSVHRGASDLHLSAGLAPMLRVDGEVWPLDGPVLSATHVADLLSPLLNRYQQKDFETSLETDFAFELPGVGR
FRVNVFQQARGMGAVFRSIPAQVQSLESLGLGAVFQRIAQLPRGLVLVTGPTGSGKSTTLAAMVDHLNQHRRQHILTLED
PIEFIHLPNRSLINQRQVHRDTQSFSAALRSALRQDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTASAAKTVDRL
VDVFPAGEKPMVRSMLSESLQAVVSQVLVKKIGGGRVAAHEVMLSTPAIRNLIREDKLAQMVSAMQTGGALGMKTLDMSL
KALVTEGVISREAAREKARVPTDI
Nucleotide
Download Length: 1035 bp
>NTDB_id=801123 P3S72_RS28595 WP_276195295.1 6156881..6157915(-) (pilT) [Pseudomonas sp. D3]
ATGGATATCACTGAATTACTCACGCAAAGCGTGCACCGGGGCGCCTCCGACCTGCACCTGTCGGCCGGCCTGGCGCCGAT
GCTGCGGGTGGATGGCGAGGTATGGCCGCTGGATGGGCCGGTGCTGTCAGCCACTCACGTGGCGGATTTGCTTAGCCCTT
TGCTCAACCGCTATCAACAAAAGGATTTCGAAACATCTCTTGAAACGGATTTTGCCTTCGAGCTGCCCGGCGTGGGGCGA
TTCCGGGTGAATGTGTTCCAGCAGGCGCGCGGCATGGGTGCGGTGTTTCGTAGCATCCCCGCGCAGGTCCAGAGCCTGGA
AAGCCTTGGGTTGGGCGCTGTGTTCCAGCGTATCGCCCAGTTGCCGCGCGGCCTGGTGCTGGTGACCGGGCCCACCGGCT
CGGGCAAGTCCACCACCCTGGCGGCGATGGTCGATCACCTCAACCAGCATCGGCGCCAGCACATCCTCACGCTGGAAGAC
CCCATCGAATTTATCCACCTGCCCAACCGGTCCCTGATCAACCAGCGCCAGGTGCATCGCGACACCCAGAGTTTTTCGGC
TGCCTTGCGCTCGGCGCTGCGGCAAGACCCGGATGTGATCCTGGTGGGTGAACTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACGGCGGCTGAGACCGGGCATCTGGTCTTCGGCACCCTGCACACCGCGTCGGCGGCCAAGACCGTGGATCGCCTG
GTGGACGTGTTCCCGGCGGGGGAAAAGCCCATGGTCCGCTCGATGCTCTCGGAGTCGCTGCAGGCGGTGGTGTCCCAGGT
GCTGGTCAAGAAGATCGGCGGTGGGCGCGTGGCGGCCCATGAAGTCATGCTGAGCACGCCGGCCATTCGCAATCTGATCC
GCGAAGACAAGCTGGCGCAGATGGTCTCGGCCATGCAGACCGGCGGGGCGTTGGGGATGAAGACGCTGGATATGAGTTTG
AAGGCGTTGGTCACGGAGGGCGTGATCAGCCGGGAAGCGGCGCGGGAGAAGGCGAGGGTGCCGACAGACATATGA
ATGGATATCACTGAATTACTCACGCAAAGCGTGCACCGGGGCGCCTCCGACCTGCACCTGTCGGCCGGCCTGGCGCCGAT
GCTGCGGGTGGATGGCGAGGTATGGCCGCTGGATGGGCCGGTGCTGTCAGCCACTCACGTGGCGGATTTGCTTAGCCCTT
TGCTCAACCGCTATCAACAAAAGGATTTCGAAACATCTCTTGAAACGGATTTTGCCTTCGAGCTGCCCGGCGTGGGGCGA
TTCCGGGTGAATGTGTTCCAGCAGGCGCGCGGCATGGGTGCGGTGTTTCGTAGCATCCCCGCGCAGGTCCAGAGCCTGGA
AAGCCTTGGGTTGGGCGCTGTGTTCCAGCGTATCGCCCAGTTGCCGCGCGGCCTGGTGCTGGTGACCGGGCCCACCGGCT
CGGGCAAGTCCACCACCCTGGCGGCGATGGTCGATCACCTCAACCAGCATCGGCGCCAGCACATCCTCACGCTGGAAGAC
CCCATCGAATTTATCCACCTGCCCAACCGGTCCCTGATCAACCAGCGCCAGGTGCATCGCGACACCCAGAGTTTTTCGGC
TGCCTTGCGCTCGGCGCTGCGGCAAGACCCGGATGTGATCCTGGTGGGTGAACTGCGTGACCTGGAAACCATCCGCCTGG
CGCTGACGGCGGCTGAGACCGGGCATCTGGTCTTCGGCACCCTGCACACCGCGTCGGCGGCCAAGACCGTGGATCGCCTG
GTGGACGTGTTCCCGGCGGGGGAAAAGCCCATGGTCCGCTCGATGCTCTCGGAGTCGCTGCAGGCGGTGGTGTCCCAGGT
GCTGGTCAAGAAGATCGGCGGTGGGCGCGTGGCGGCCCATGAAGTCATGCTGAGCACGCCGGCCATTCGCAATCTGATCC
GCGAAGACAAGCTGGCGCAGATGGTCTCGGCCATGCAGACCGGCGGGGCGTTGGGGATGAAGACGCTGGATATGAGTTTG
AAGGCGTTGGTCACGGAGGGCGTGATCAGCCGGGAAGCGGCGCGGGAGAAGGCGAGGGTGCCGACAGACATATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.