Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RDU00_RS20130 Genome accession   NZ_CP133449
Coordinates   3827810..3828499 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain KK195     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3822810..3833499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS20110 (RDU00_20090) yxeA 3823715..3824062 (-) 348 WP_003227084.1 YxeA family protein -
  RDU00_RS20115 (RDU00_20095) yxdM 3824076..3825944 (-) 1869 WP_003244410.1 ABC transporter permease YxdM -
  RDU00_RS20120 (RDU00_20100) yxdL 3825919..3826692 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  RDU00_RS20125 (RDU00_20105) yxdK 3826836..3827813 (-) 978 WP_003243885.1 two-component system sensor histidine kinase YxdK -
  RDU00_RS20130 (RDU00_20110) braR 3827810..3828499 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  RDU00_RS20135 (RDU00_20115) iolJ 3828607..3829479 (-) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  RDU00_RS20140 (RDU00_20120) iolI 3829500..3830336 (-) 837 WP_003244546.1 2-keto-myo-inositol isomerase -
  RDU00_RS20145 (RDU00_20125) iolH 3830422..3831291 (-) 870 WP_003243149.1 sugar phosphate isomerase/epimerase family protein -
  RDU00_RS20150 (RDU00_20130) iolG 3831311..3832345 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=799183 RDU00_RS20130 WP_003243527.1 3827810..3828499(-) (braR) [Bacillus subtilis strain KK195]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=799183 RDU00_RS20130 WP_003243527.1 3827810..3828499(-) (braR) [Bacillus subtilis strain KK195]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGTGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406