Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   PYW37_RS11465 Genome accession   NZ_CP118969
Coordinates   2253793..2254731 (-) Length   312 a.a.
NCBI ID   WP_023188634.1    Uniprot ID   -
Organism   Lactococcus lactis strain DSM 20481     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248793..2259731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS11440 frr 2248910..2249467 (-) 558 WP_004254618.1 ribosome recycling factor -
  PYW37_RS11445 pyrH 2249680..2250396 (-) 717 WP_004254608.1 UMP kinase -
  PYW37_RS11450 - 2250481..2250933 (-) 453 WP_023188637.1 hypothetical protein -
  PYW37_RS11455 - 2251067..2252254 (-) 1188 WP_023188636.1 acetate kinase -
  PYW37_RS11460 - 2252411..2253598 (-) 1188 WP_025016831.1 acetate kinase -
  PYW37_RS11465 comYH 2253793..2254731 (-) 939 WP_023188634.1 class I SAM-dependent methyltransferase Machinery gene
  PYW37_RS11470 - 2254819..2255070 (-) 252 WP_004254583.1 DUF3165 family protein -
  PYW37_RS11475 typA 2255171..2257003 (-) 1833 WP_025016832.1 translational GTPase TypA -
  PYW37_RS11480 - 2257191..2257649 (-) 459 WP_025016833.1 hypothetical protein -
  PYW37_RS11485 - 2257806..2258432 (-) 627 WP_023188632.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34750.85 Da        Isoelectric Point: 4.3281

>NTDB_id=796969 PYW37_RS11465 WP_023188634.1 2253793..2254731(-) (comYH) [Lactococcus lactis strain DSM 20481]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNNEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=796969 PYW37_RS11465 WP_023188634.1 2253793..2254731(-) (comYH) [Lactococcus lactis strain DSM 20481]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAATGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487