Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   PUW52_RS09865 Genome accession   NZ_CP118078
Coordinates   1944541..1945014 (-) Length   157 a.a.
NCBI ID   WP_150888092.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939541..1950014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS09845 (PUW52_09845) - 1941242..1941703 (-) 462 WP_042754057.1 CtsR family transcriptional regulator -
  PUW52_RS09850 (PUW52_09850) - 1941963..1942313 (+) 351 WP_024052343.1 hypothetical protein -
  PUW52_RS09855 (PUW52_09855) tsf 1942400..1943443 (-) 1044 WP_070672494.1 translation elongation factor Ts -
  PUW52_RS09860 (PUW52_09860) rpsB 1943526..1944308 (-) 783 WP_003026510.1 30S ribosomal protein S2 -
  PUW52_RS09865 (PUW52_09865) comR/comR2 1944541..1945014 (-) 474 WP_150888092.1 sigma-70 family RNA polymerase sigma factor Regulator
  PUW52_RS09870 (PUW52_09870) rplQ 1945441..1945827 (-) 387 WP_003026513.1 50S ribosomal protein L17 -
  PUW52_RS09875 (PUW52_09875) - 1945839..1946777 (-) 939 WP_024053187.1 DNA-directed RNA polymerase subunit alpha -
  PUW52_RS09880 (PUW52_09880) rpsK 1946822..1947205 (-) 384 WP_001118385.1 30S ribosomal protein S11 -
  PUW52_RS09885 (PUW52_09885) rpsM 1947225..1947590 (-) 366 WP_002262317.1 30S ribosomal protein S13 -
  PUW52_RS09890 (PUW52_09890) rpmJ 1947606..1947722 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  PUW52_RS09895 (PUW52_09895) infA 1947747..1947965 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  PUW52_RS09900 (PUW52_09900) - 1948081..1948719 (-) 639 WP_003031144.1 adenylate kinase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19282.00 Da        Isoelectric Point: 6.2655

>NTDB_id=789866 PUW52_RS09865 WP_150888092.1 1944541..1945014(-) (comR/comR2) [Streptococcus anginosus strain VSI16]
MEFKELYAKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSQYPQLVEEESQLYVYYKTKFRNHILDILRKQESQKR
KLNRQAYEEVSEIGHQLSLKELYLDELVILRDQLNSYQAQLSPEKQEQYERLLADERFKGRQSMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=789866 PUW52_RS09865 WP_150888092.1 1944541..1945014(-) (comR/comR2) [Streptococcus anginosus strain VSI16]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTGCTGAAGTGTCGGAGAGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTAAGCCAGTATCCGCAGCTGGTAGAAGAAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTTCGTAAACAGGAAAGTCAAAAACGC
AAACTTAATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACCAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTCTCCGAGACCAACTAAATAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTATGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAATCCATGATTCGAGAATTAAGAGCCTACTTAAAAGACTATAGCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

58.974

99.363

0.586
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

58.974

99.363

0.586
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae Rx1

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae D39

52.597

98.089

0.516
  comX/comX2 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/comX1 Streptococcus pneumoniae R6

52.597

98.089

0.516
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

51.948

98.089

0.51
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

51.948

98.089

0.51
  comX/sigX Streptococcus mutans UA159

50

99.363

0.497
  comX/sigX Streptococcus suis isolate S10

48.387

98.726

0.478
  comX/sigX Streptococcus suis D9

48.387

98.726

0.478
  comX/sigX Streptococcus suis P1/7

48.387

98.726

0.478
  comX Streptococcus salivarius SK126

46.104

98.089

0.452
  comX Streptococcus thermophilus LMD-9

45.455

98.089

0.446
  comX/sigX Streptococcus salivarius strain HSISS4

45.455

98.089

0.446
  comX Streptococcus thermophilus LMG 18311

45.455

98.089

0.446
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

41.667

99.363

0.414
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

41.667

99.363

0.414
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

41.667

99.363

0.414
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

41.667

99.363

0.414
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

41.667

99.363

0.414
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

41.667

99.363

0.414
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.462

99.363

0.382