Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   PUW62_RS09825 Genome accession   NZ_CP118046
Coordinates   1934767..1935240 (-) Length   157 a.a.
NCBI ID   WP_274997083.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI52     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1929767..1940240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS09805 (PUW62_09805) - 1931468..1931929 (-) 462 WP_042754057.1 CtsR family transcriptional regulator -
  PUW62_RS09810 (PUW62_09810) - 1932189..1932539 (+) 351 WP_024052343.1 hypothetical protein -
  PUW62_RS09815 (PUW62_09815) tsf 1932626..1933669 (-) 1044 WP_070672494.1 translation elongation factor Ts -
  PUW62_RS09820 (PUW62_09820) rpsB 1933752..1934534 (-) 783 WP_003026510.1 30S ribosomal protein S2 -
  PUW62_RS09825 (PUW62_09825) comR/comR2 1934767..1935240 (-) 474 WP_274997083.1 sigma-70 family RNA polymerase sigma factor Regulator
  PUW62_RS09830 (PUW62_09830) rplQ 1935667..1936053 (-) 387 WP_003026513.1 50S ribosomal protein L17 -
  PUW62_RS09835 (PUW62_09835) - 1936065..1937003 (-) 939 WP_024053187.1 DNA-directed RNA polymerase subunit alpha -
  PUW62_RS09840 (PUW62_09840) rpsK 1937048..1937431 (-) 384 WP_050256675.1 30S ribosomal protein S11 -
  PUW62_RS09845 (PUW62_09845) rpsM 1937451..1937816 (-) 366 WP_002262317.1 30S ribosomal protein S13 -
  PUW62_RS09850 (PUW62_09850) rpmJ 1937832..1937948 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  PUW62_RS09855 (PUW62_09855) infA 1937973..1938191 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  PUW62_RS09860 (PUW62_09860) - 1938307..1938945 (-) 639 WP_003031144.1 adenylate kinase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19300.02 Da        Isoelectric Point: 6.2655

>NTDB_id=789497 PUW62_RS09825 WP_274997083.1 1934767..1935240(-) (comR/comR2) [Streptococcus anginosus strain VSI52]
MEFKELYAKVRGIVLKCRREYYVHLWELSDWEQEGMLVLYQLVSQYPQLVEEESQLYVYYKTKFRNHILDILRKQESQKR
KLNRQAYEEVSEIGHQLSLKELYLDELVIFRDQLNSYQAQLSPEKQEQYERLLADERFKGRQAMIRELRAYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=789497 PUW62_RS09825 WP_274997083.1 1934767..1935240(-) (comR/comR2) [Streptococcus anginosus strain VSI52]
ATGGAGTTCAAGGAGTTATATGCCAAGGTGAGAGGAATTGTGCTGAAGTGTCGGAGAGAATATTATGTCCACCTGTGGGA
ATTAAGCGATTGGGAACAAGAGGGCATGTTGGTGCTCTATCAGTTGGTAAGCCAGTATCCGCAGCTGGTAGAAGAAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTTCGTAAACAGGAAAGTCAAAAACGC
AAACTTAATCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACCAGCTCAGCCTAAAAGAACTATATCTGGATGAATT
GGTGATTTTCCGAGACCAACTAAATAGCTATCAAGCTCAACTGAGCCCAGAGAAACAGGAGCAGTATGAGCGCTTACTAG
CCGATGAACGGTTCAAAGGCCGCCAAGCCATGATTCGAGAATTAAGAGCCTACTTAAAAGACTATAGCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.256

99.363

0.599
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae TIGR4

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae TIGR4

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae Rx1

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae Rx1

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae D39

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae D39

53.247

98.089

0.522
  comX/comX2 Streptococcus pneumoniae R6

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae R6

53.247

98.089

0.522
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.247

98.089

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.597

98.089

0.516
  comX/sigX Streptococcus mutans UA159

50

99.363

0.497
  comX/sigX Streptococcus suis isolate S10

47.742

98.726

0.471
  comX/sigX Streptococcus suis P1/7

47.742

98.726

0.471
  comX/sigX Streptococcus suis D9

47.742

98.726

0.471
  comX Streptococcus salivarius SK126

46.104

98.089

0.452
  comX/sigX Streptococcus salivarius strain HSISS4

45.455

98.089

0.446
  comX Streptococcus thermophilus LMG 18311

45.455

98.089

0.446
  comX Streptococcus thermophilus LMD-9

45.455

98.089

0.446
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.308

99.363

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

42.308

99.363

0.42
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

42.308

99.363

0.42
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.103

99.363

0.389