Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PUB83_RS00260 Genome accession   NZ_CP117918
Coordinates   46233..47267 (-) Length   344 a.a.
NCBI ID   WP_011707389.1    Uniprot ID   A0A081UZ58
Organism   Aeromonas hydrophila subsp. hydrophila strain PSKL.DP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 41233..52267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUB83_RS00240 (PUB83_19930) - 42051..42761 (-) 711 WP_274277641.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PUB83_RS00245 (PUB83_19935) srmB 42890..44113 (+) 1224 WP_016351974.1 ATP-dependent RNA helicase SrmB -
  PUB83_RS00250 (PUB83_19940) yaaA 44290..45063 (-) 774 WP_274277642.1 peroxide stress protein YaaA -
  PUB83_RS00255 (PUB83_19945) pilU 45095..46204 (-) 1110 WP_065475661.1 type IVa pilus ATPase TapU Machinery gene
  PUB83_RS00260 (PUB83_19950) pilT 46233..47267 (-) 1035 WP_011707389.1 type IVa pilus ATPase TapT Machinery gene
  PUB83_RS00265 (PUB83_19955) - 47307..48008 (+) 702 WP_135318968.1 YggS family pyridoxal phosphate-dependent enzyme -
  PUB83_RS00270 (PUB83_19960) proC 48067..48891 (+) 825 WP_274277643.1 pyrroline-5-carboxylate reductase -
  PUB83_RS00275 (PUB83_19965) - 48932..49483 (+) 552 WP_016351969.1 YggT family protein -
  PUB83_RS00280 (PUB83_19970) yggU 49483..49782 (+) 300 WP_274277644.1 DUF167 family protein YggU -
  PUB83_RS00285 (PUB83_19975) - 49801..50220 (+) 420 WP_011707384.1 DUF4426 domain-containing protein -
  PUB83_RS00290 (PUB83_19980) - 50268..50579 (-) 312 WP_042064670.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38287.06 Da        Isoelectric Point: 6.7439

>NTDB_id=788312 PUB83_RS00260 WP_011707389.1 46233..47267(-) (pilT) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVAALDAKAKAVDPNTI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=788312 PUB83_RS00260 WP_011707389.1 46233..47267(-) (pilT) [Aeromonas hydrophila subsp. hydrophila strain PSKL.DP]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAACATAAAGCCTCGGATCTACACCTCTCGGCTGGGGTTCCCCCGAT
GATCAGGGTTGATGGCGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACACCGGGAAGTGCACGCCCTCATCTACGACA
TCATGAACGACCACCAGCGCAAGGAACTGGAAGAGAACTTCGAGGTGGACTTCTCGTTCGAGGTGCCGAACCTGGCCCGC
TTCCGGGTCAACGCCTTTCAGCAGGCGCGCGGCTCCGGCGCGGTATTTCGGACCATCCCCAGCACGGTGCTGAGCCTCGA
AGATCTGGACGCGCCGGAGATCTTTCGCAAGATTGCCGAATACCCGCGCGGCCTGGTGCTGGTGACCGGTCCGACCGGCT
CGGGTAAATCCACCACCCTGGCGGCCATGGTCAACTACATCAACGAGAACTTTCATCACCACATCCTCACCATCGAGGAT
CCCATCGAATTCGTGCACGAGAACAAGCGCTGCCTGGTGAACCAGCGGGAAGTGCACCGCGATACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCGCTGCGGGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGTGACCTGGAAACCATTCGTCTGG
CCATGACCGCGGCCGAGACCGGCCACTTGGTGTTCGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCCGGTGCGGAAAAAGACATGGTGCGCTCCATGCTCTCCGAGTCGCTGCGGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGCATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATGGGGATTCCCGCCGTGCGTAACCTCATCC
GGGAAGACAAGATTGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGCCGCGGCGTAGTGGCGGCGCTGGATGCCAAGGCCAAGGCGGTTGATCCCAACACCATCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081UZ58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.326

100

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.833

99.128

0.762
  pilT Pseudomonas aeruginosa PAK

75.953

99.128

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

76.558

97.965

0.75
  pilT Vibrio cholerae strain A1552

76.558

97.965

0.75
  pilT Legionella pneumophila strain Lp02

72.647

98.837

0.718
  pilT Legionella pneumophila strain ERS1305867

72.647

98.837

0.718
  pilT Neisseria meningitidis 8013

70.796

98.547

0.698
  pilT Neisseria gonorrhoeae MS11

70.501

98.547

0.695
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407