Detailed information NTG0775006

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: PF976_RS01740
• Genome accession: NZ_CP116011
• Coordinates: 341499..342647 (+)
• Length: 382 a.a.
• NCBI ID: WP_013351004.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM124317
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 336499..347647

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF976_RS01720 (PF976_01720)	-	336896..337579 (-)	684	WP_014469746.1	ABC transporter ATP-binding protein	-
PF976_RS01725 (PF976_01725)	-	337594..339030 (-)	1437	WP_013351001.1	ABC transporter permease	-
PF976_RS01730 (PF976_01730)	-	339243..339926 (+)	684	WP_013351002.1	response regulator transcription factor	-
PF976_RS01735 (PF976_01735)	-	339913..341340 (+)	1428	WP_161988189.1	sensor histidine kinase	-
PF976_RS01740 (PF976_01740)	rapC	341499..342647 (+)	1149	WP_013351004.1	tetratricopeptide repeat protein	Regulator
PF976_RS01745 (PF976_01745)	phrC	342631..342750 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
PF976_RS01750 (PF976_01750)	-	342898..342999 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
PF976_RS01755 (PF976_01755)	-	343094..344458 (-)	1365	WP_014471434.1	aspartate kinase	-
PF976_RS01760 (PF976_01760)	ceuB	344872..345825 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
PF976_RS01765 (PF976_01765)	-	345815..346762 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
PF976_RS01770 (PF976_01770)	-	346756..347514 (+)	759	WP_013351009.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45545.80 Da
• Isoelectric Point: 5.0674

>NTDB_id=775006 PF976_RS01740 WP_013351004.1 341499..342647(+) (rapC) [Bacillus amyloliquefaciens strain SRCM124317]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=775006 PF976_RS01740 WP_013351004.1 341499..342647(+) (rapC) [Bacillus amyloliquefaciens strain SRCM124317]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATCACGTATTATAAACAGGCTGAGAAAAAATTGGCCT
TCGTATCGGACCACGTGGAGCGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.723	100	0.827
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571