Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QQA23_RS04420 Genome accession   NZ_CP126948
Coordinates   902537..903517 (+) Length   326 a.a.
NCBI ID   WP_001696140.1    Uniprot ID   -
Organism   Escherichia coli O78:H4 strain APEC E14033     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897537..908517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA23_RS04390 (QQA23_04395) - 897911..898897 (-) 987 WP_000784004.1 TRAP transporter substrate-binding protein -
  QQA23_RS04395 (QQA23_04400) hemW 899214..900350 (-) 1137 WP_000239950.1 radical SAM family heme chaperone HemW -
  QQA23_RS04400 (QQA23_04405) rdgB 900343..900936 (-) 594 WP_001174747.1 XTP/dITP diphosphatase -
  QQA23_RS04405 (QQA23_04410) yggU 900944..901234 (-) 291 WP_001277194.1 DUF167 family protein YggU -
  QQA23_RS04410 (QQA23_04415) yggT 901231..901797 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  QQA23_RS04415 (QQA23_04420) yggS 901815..902519 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  QQA23_RS04420 (QQA23_04425) pilT 902537..903517 (+) 981 WP_001696140.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QQA23_RS04425 (QQA23_04430) ruvX 903691..904107 (-) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  QQA23_RS04430 (QQA23_04435) yqgE 904107..904670 (-) 564 WP_001318029.1 YqgE/AlgH family protein -
  QQA23_RS04435 (QQA23_04440) gshB 904779..905729 (-) 951 WP_000593258.1 glutathione synthase -
  QQA23_RS04440 (QQA23_04445) rsmE 905742..906473 (-) 732 WP_001300912.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  QQA23_RS04445 (QQA23_04450) endA 906553..907260 (-) 708 WP_001305312.1 deoxyribonuclease I -
  QQA23_RS04450 (QQA23_04455) yggI 907355..907852 (-) 498 WP_001696137.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35987.21 Da        Isoelectric Point: 5.9975

>NTDB_id=769255 QQA23_RS04420 WP_001696140.1 902537..903517(+) (pilT) [Escherichia coli O78:H4 strain APEC E14033]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPAVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=769255 QQA23_RS04420 WP_001696140.1 902537..903517(+) (pilT) [Escherichia coli O78:H4 strain APEC E14033]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGCGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGATTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGCATTTCGCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCAGCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTCGAA
TATCTCTATGCAAGCCAGCGATGTTTGATCCAGCAGCGGGAAATCGGTTTGCATTGTATGACGTTCGCATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATTTGGTGCTGGCAACATTACATACGCGTGGTGCGGCGCAGGCAGTTGAGCGACTGGTAGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCGGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGTTGTTTGAATTGCTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilB Legionella pneumophila strain ERS1305867

31.152

100

0.365
  pilU Acinetobacter baylyi ADP1

36.646

98.773

0.362