Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OZ429_RS13120 Genome accession   NZ_CP114134
Coordinates   2784119..2785156 (-) Length   345 a.a.
NCBI ID   WP_269122267.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain YLX21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2779119..2790156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ429_RS13095 (OZ429_13095) - 2779757..2780704 (-) 948 WP_269122257.1 aspartate carbamoyltransferase catalytic subunit -
  OZ429_RS13100 (OZ429_13100) ruvX 2780718..2781185 (-) 468 WP_269122259.1 Holliday junction resolvase RuvX -
  OZ429_RS13105 (OZ429_13105) - 2781178..2781744 (-) 567 WP_269122261.1 YqgE/AlgH family protein -
  OZ429_RS13110 (OZ429_13110) - 2782039..2782596 (+) 558 WP_269122263.1 DNA-3-methyladenine glycosylase I -
  OZ429_RS13115 (OZ429_13115) pilU 2782867..2783997 (-) 1131 WP_269122265.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OZ429_RS13120 (OZ429_13120) pilT 2784119..2785156 (-) 1038 WP_269122267.1 type IV pilus twitching motility protein PilT Machinery gene
  OZ429_RS13125 (OZ429_13125) - 2785511..2786203 (+) 693 WP_269122269.1 YggS family pyridoxal phosphate-dependent enzyme -
  OZ429_RS13130 (OZ429_13130) proC 2786261..2787115 (+) 855 WP_269122271.1 pyrroline-5-carboxylate reductase -
  OZ429_RS13135 (OZ429_13135) - 2787680..2788105 (+) 426 WP_269126964.1 HU family DNA-binding protein -
  OZ429_RS13140 (OZ429_13140) - 2788212..2788853 (+) 642 WP_269126966.1 M23 family metallopeptidase -
  OZ429_RS13145 (OZ429_13145) - 2788949..2789261 (+) 313 Protein_2479 DUF3861 family protein -
  OZ429_RS13150 (OZ429_13150) - 2789374..2789970 (+) 597 WP_269122273.1 DUF1439 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38671.35 Da        Isoelectric Point: 6.6652

>NTDB_id=764502 OZ429_RS13120 WP_269122267.1 2784119..2785156(-) (pilT) [Xanthomonas fragariae strain YLX21]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAAMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRSLITRNQAREYAKDKRIFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=764502 OZ429_RS13120 WP_269122267.1 2784119..2785156(-) (pilT) [Xanthomonas fragariae strain YLX21]
ATGGATATCGCTGAACTATTGGCGTTTTCTGTCAAGAACAAGGCGTCGGACCTGCACCTGTCTGCAGGCCTGCCGCCGAT
GATCCGAGTTGATGGCGACGTCCGCCGCATCAATATTCCGGCCCTGGACCATAAACAGGTGCACGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGATTACGAGGAATTCCTCGAGGTCGACTTCTCGTTCGAAATTCCGTCGCTGGCGCGC
TTCCGCGTCAATGCGTTCAACCAGAACCGCGGCGCCGGTGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACGTTGGA
AGACCTTGGCTGCCCACCGATCTTCCGGCAGCTGATCGATCAGCCGCAGGGCTTGATCCTGGTCACCGGGCCGACCGGTT
CAGGCAAGTCGACCACGCTAGCCGCCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACTGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAATCAGCGCGAAGTGCACCGCGACACGCACGGCTTCAACGA
AGCGTTGCGCTCGGCATTGCGTGAAGATCCGGATATCATCCTGGTCGGCGAGTTGCGCGATCTTGAAACCATCCGCTTGG
CACTCACCGCTGCGGAAACCGGCCATCTGGTGTTCGGTACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTTTTCCCGGCCGGCGAAAAACCGATGGTGCGCTCGATGCTGTCCGAATCCTTGCGCGCGGTGATTTCGCAGGC
GCTGCTGAAGAAAGTCGGCGGTGGACGCACCGCGGCCTGGGAAATCATGGTCGGCACCCCGGCCATCCGTAACCTGATCC
GGGAGGACAAGGTGGCGCAGATGTATTCGTCGATCCAGACCGGCCAGCAGTACGGCATGCAGACGCTGGATCAGCATTTA
CAGGACCTGATCAAACGCAGCCTGATCACGCGCAACCAAGCACGCGAATACGCCAAGGACAAGCGGATATTCGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.942

99.71

0.797
  pilT Acinetobacter baumannii D1279779

79.942

99.71

0.797
  pilT Acinetobacter baumannii strain A118

79.942

99.71

0.797
  pilT Pseudomonas stutzeri DSM 10701

79.651

99.71

0.794
  pilT Acinetobacter baylyi ADP1

79.07

99.71

0.788
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.733

95.362

0.684
  pilT Vibrio cholerae strain A1552

71.733

95.362

0.684
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

41.003

98.261

0.403
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394