Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PALA52_RS02040 Genome accession   NZ_CP110347
Coordinates   441204..442238 (+) Length   344 a.a.
NCBI ID   WP_003084552.1    Uniprot ID   A0A0H2ZKV1
Organism   Pseudomonas aeruginosa strain PALA52     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436204..447238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS02015 (PALA52_00401) - 436492..438459 (-) 1968 WP_024918461.1 dynamin-like GTPase family protein -
  PALA52_RS02020 - 438567..438863 (-) 297 WP_121367052.1 DUF167 domain-containing protein -
  PALA52_RS02025 (PALA52_00402) - 438860..439453 (-) 594 WP_003155373.1 YggT family protein -
  PALA52_RS02030 (PALA52_00403) proC 439464..440285 (-) 822 WP_124181617.1 pyrroline-5-carboxylate reductase -
  PALA52_RS02035 (PALA52_00404) - 440297..440989 (-) 693 WP_003084549.1 YggS family pyridoxal phosphate-dependent enzyme -
  PALA52_RS02040 (PALA52_00405) pilT 441204..442238 (+) 1035 WP_003084552.1 type IV pilus twitching motility protein PilT Machinery gene
  PALA52_RS02045 (PALA52_00406) pilU 442416..443564 (+) 1149 WP_263957462.1 type IV pilus ATPase PilU Machinery gene
  PALA52_RS02050 (PALA52_00407) czcD 443572..444471 (-) 900 WP_024918014.1 CDF family zinc transporter CzcD -
  PALA52_RS02055 (PALA52_00408) - 444625..445029 (+) 405 WP_024918013.1 NINE protein -
  PALA52_RS02060 (PALA52_00409) - 445272..446645 (+) 1374 WP_024918012.1 pyridoxal-phosphate dependent enzyme -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38020.89 Da        Isoelectric Point: 6.8364

>NTDB_id=754252 PALA52_RS02040 WP_003084552.1 441204..442238(+) (pilT) [Pseudomonas aeruginosa strain PALA52]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED
PIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKAMVRSMLSESLQSVISQTLIKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGSLGMQTLDMCL
KGLVAKGLISRENAREKAKIPENF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=754252 PALA52_RS02040 WP_003084552.1 441204..442238(+) (pilT) [Pseudomonas aeruginosa strain PALA52]
ATGGATATTACCGAGCTGCTCGCCTTCAGTGCCAAACAGGGCGCTTCGGACCTGCACCTCTCCGCCGGCCTGCCGCCCAT
GATCCGGGTGGATGGCGATGTACGCCGGATCAACCTGCCACCGCTGGAACACAAGCAGGTGCATGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTTCGAAGAATTCCTCGAGACCGACTTCTCCTTCGAGGTGCCGGGCGTCGCGCGT
TTCCGGGTCAACGCCTTCAACCAGAACCGTGGCGCCGGCGCGGTATTCCGGACCATTCCCTCCAAGGTACTGACCATGGA
GGAGCTTGGCATGGGAGAAGTGTTCAAACGTGTTTCAGACGTCCCGCGCGGACTGGTGCTGGTCACCGGGCCGACCGGTT
CGGGCAAGTCCACCACCCTGGCAGCGATGCTCGACTACCTGAACAACACCAAGTACCACCACATCCTCACCATCGAGGAC
CCGATCGAATTCGTCCACGAATCGAAGAAGTGCCTGGTCAACCAGCGCGAGGTGCATCGCGACACCCTCGGCTTCAGCGA
AGCGCTGCGCTCGGCGCTGCGGGAGGACCCGGACATCATCCTGGTCGGTGAGATGCGCGACCTGGAGACCATCCGCCTGG
CCCTGACCGCGGCGGAGACCGGCCACCTGGTATTCGGCACCCTGCACACCACCTCGGCGGCGAAGACCATCGACCGGGTG
GTCGACGTGTTCCCGGCCGAGGAAAAGGCCATGGTTCGCTCGATGCTCTCCGAGTCGCTGCAATCGGTGATCTCGCAGAC
CCTGATCAAGAAGATCGGCGGTGGCCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCGCAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTATTCGGCGATCCAGACCGGCGGCTCGCTGGGCATGCAGACCCTCGACATGTGCCTC
AAGGGGCTGGTCGCCAAGGGCCTGATCAGCCGCGAGAACGCCCGCGAGAAGGCGAAGATCCCGGAAAACTTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

100

100

1
  pilT Pseudomonas stutzeri DSM 10701

94.186

100

0.942
  pilT Acinetobacter baumannii D1279779

84.302

100

0.843
  pilT Acinetobacter baumannii strain A118

84.302

100

0.843
  pilT Acinetobacter nosocomialis M2

84.012

100

0.84
  pilT Acinetobacter baylyi ADP1

81.686

100

0.817
  pilT Legionella pneumophila strain Lp02

74.556

98.256

0.733
  pilT Legionella pneumophila strain ERS1305867

74.556

98.256

0.733
  pilT Neisseria meningitidis 8013

66.667

100

0.669
  pilT Neisseria gonorrhoeae MS11

66.377

100

0.666
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.765

98.837

0.66
  pilT Vibrio cholerae strain A1552

66.765

98.837

0.66
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.464

100

0.526
  pilU Vibrio cholerae strain A1552

41.298

98.547

0.407
  pilU Pseudomonas stutzeri DSM 10701

40.896

97.384

0.398
  pilU Acinetobacter baylyi ADP1

39.306

100

0.395