Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OEG85_RS05900 Genome accession   NZ_CP107241
Coordinates   1422275..1423531 (-) Length   418 a.a.
NCBI ID   WP_268214353.1    Uniprot ID   A0AA47ID34
Organism   Xanthomonas hortorum strain Oregano 108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1419728..1425978 1422275..1423531 within 0


Gene organization within MGE regions


Location: 1419728..1425978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG85_RS05885 (OEG85_05885) - 1419728..1420690 (+) 963 WP_268211717.1 IS1595 family transposase -
  OEG85_RS05890 (OEG85_05890) coaE 1420741..1421391 (-) 651 WP_268214352.1 dephospho-CoA kinase -
  OEG85_RS05895 (OEG85_05895) - 1421405..1422268 (-) 864 WP_002812278.1 A24 family peptidase -
  OEG85_RS05900 (OEG85_05900) pilC 1422275..1423531 (-) 1257 WP_268214353.1 type II secretion system F family protein Machinery gene
  OEG85_RS05905 (OEG85_05905) - 1423694..1424674 (+) 981 WP_047130215.1 IS5 family transposase -
  OEG85_RS05910 (OEG85_05910) - 1424834..1425978 (+) 1145 WP_268211553.1 IS3 family transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45531.02 Da        Isoelectric Point: 10.3591

>NTDB_id=738720 OEG85_RS05900 WP_268214353.1 1422275..1423531(-) (pilC) [Xanthomonas hortorum strain Oregano 108]
MSAVRSAVKAKPASQAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLMVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRKMVGQIRTDIEGGSSLHEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAVLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LIVAVGAIVGFIFAYKRSPAMQHGMDRLILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VIRMREDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=738720 OEG85_RS05900 WP_268214353.1 1422275..1423531(-) (pilC) [Xanthomonas hortorum strain Oregano 108]
ATGTCAGCAGTACGTAGTGCAGTCAAAGCCAAGCCTGCCTCACAGGCTGAACAGATGAGCCCATTTGTTTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAGGGCGAACAGACCGCCCGTAATGCCAATTTGCTACGCGCAGAATTGCGGAGGCAAG
GCATCACACCACTGATGGTCAAAGTGAAGCCCAAACCGCTATTTGGTGCTGCAGGCAAGAAAGTCTCCGCAAAGGATATC
TCTTTCTTTAGTCGACAGATGGCCACAATGATGAAATCGGGTGTACCTATCGTAGGCGCACTGGAGATCATTGGCAGCGG
ACAGAAAAATCCACGCATGCGCAAAATGGTTGGGCAGATCCGTACCGATATAGAAGGAGGATCTTCGCTACATGAGGCGG
TAAGCAAGCATCCAGTGCAGTTTGACGAGCTCTATCGGAACTTGGTCAAGGCAGGCGAAGGCGCAGGCGTGTTGGAAACT
GTGCTGGACACTGTTGCTACTTATAAAGAGAATCTGGAAGCACTTAAGGGCAAGATTAAAAAAGCACTATTTTATCCAGC
CATGGTTATGGCAGTAGCAGTTCTGGTGAGTTCAATCTTGCTCGTCTGGGTCGTGCCCCAATTTGAAGACGTCTTTAAGG
GCTTCGGCGCAGAGCTTCCCGCTTTTACCCAAATGATCGTCAACTTATCGCGTTTTATGGTGTCTTGGTGGTGGCTGATG
TTGATCGTAGCCGTGGGCGCAATAGTGGGCTTTATCTTCGCGTATAAGCGCTCGCCAGCAATGCAACACGGCATGGATCG
CTTGATCCTCAAAGTGCCGATCATTGGCCAGATCATGCACAACAGCTCTATCGCGCGTTTTGCTCGCACAACGGCCGTCA
CATTCAAAGCAGGCGTACCTCTAGTCGAGGCACTCGGTATTGTGGCCGGTGCTACAGGCAACTCTGTCTATGAAAAAGCG
GTAATTCGCATGCGCGAAGACGTATCTGTGGGCTATCCCGTCAACATGGCGATGAAGCAAGTCAATCTGTTCCCTCACAT
GGTGGTGCAGATGACTGCCATCGGCGAAGAGGCCGGCGCCTTGGATGCCATGCTGTTCAAAGTGGCTGAGTACTTCGAGC
AAGAGGTCAACAATGCTGTCGACGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTATTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.333

96.89

0.517
  pilC Acinetobacter baumannii D1279779

52.228

96.651

0.505
  pilC Acinetobacter baylyi ADP1

51.724

97.129

0.502
  pilC Legionella pneumophila strain ERS1305867

52.02

94.737

0.493
  pilG Neisseria gonorrhoeae MS11

43.317

96.651

0.419
  pilG Neisseria meningitidis 44/76-A

42.822

96.651

0.414
  pilC Vibrio cholerae strain A1552

41.626

97.129

0.404
  pilC Vibrio campbellii strain DS40M4

39.702

96.411

0.383