Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OEG85_RS05915 Genome accession   NZ_CP107241
Coordinates   1426281..1426697 (+) Length   138 a.a.
NCBI ID   WP_268214354.1    Uniprot ID   A0AA47EUC6
Organism   Xanthomonas hortorum strain Oregano 108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1419728..1425978 1426281..1426697 flank 303


Gene organization within MGE regions


Location: 1419728..1426697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG85_RS05885 (OEG85_05885) - 1419728..1420690 (+) 963 WP_268211717.1 IS1595 family transposase -
  OEG85_RS05890 (OEG85_05890) coaE 1420741..1421391 (-) 651 WP_268214352.1 dephospho-CoA kinase -
  OEG85_RS05895 (OEG85_05895) - 1421405..1422268 (-) 864 WP_002812278.1 A24 family peptidase -
  OEG85_RS05900 (OEG85_05900) pilC 1422275..1423531 (-) 1257 WP_268214353.1 type II secretion system F family protein Machinery gene
  OEG85_RS05905 (OEG85_05905) - 1423694..1424674 (+) 981 WP_047130215.1 IS5 family transposase -
  OEG85_RS05910 (OEG85_05910) - 1424834..1425978 (+) 1145 WP_268211553.1 IS3 family transposase -
  OEG85_RS05915 (OEG85_05915) pilA 1426281..1426697 (+) 417 WP_268214354.1 pilin Machinery gene

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14394.72 Da        Isoelectric Point: 8.4815

>NTDB_id=738721 OEG85_RS05915 WP_268214354.1 1426281..1426697(+) (pilA) [Xanthomonas hortorum strain Oregano 108]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQNYVAKSQVAAALAEITPGKTQYEVMVNEGKAASITPDLIGLKTSNRCTI
STPNPGETGAITCALLNSSPKVGAAFISWTRAADGTWTCSTTLATADKLKYAPSTCQG

Nucleotide


Download         Length: 417 bp        

>NTDB_id=738721 OEG85_RS05915 WP_268214354.1 1426281..1426697(+) (pilA) [Xanthomonas hortorum strain Oregano 108]
ATGAAAAAGCAGCAAGGTTTTACGTTGATTGAATTGATGATCGTGGTTGCCATCATTGCCATTTTGGCGGCGATTGCCCT
GCCGGCGTATCAAAACTATGTGGCCAAATCGCAGGTTGCTGCAGCCTTGGCTGAGATCACTCCTGGCAAGACTCAGTACG
AAGTGATGGTTAACGAAGGCAAGGCGGCGTCGATTACTCCGGATCTCATCGGTCTTAAGACATCCAACCGTTGCACGATC
AGCACCCCGAATCCGGGTGAGACTGGCGCTATCACGTGTGCCTTGTTGAATTCCAGTCCGAAGGTTGGCGCCGCTTTTAT
CTCCTGGACCCGAGCTGCGGATGGTACGTGGACCTGTTCGACCACGTTGGCCACTGCTGATAAGCTTAAGTATGCTCCTT
CAACCTGCCAAGGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

47.887

100

0.493
  pilA/pilAI Pseudomonas stutzeri DSM 10701

49.275

100

0.493
  pilA/pilAII Pseudomonas stutzeri DSM 10701

47.445

99.275

0.471
  pilA Pseudomonas aeruginosa PAK

43.796

99.275

0.435
  comP Acinetobacter baylyi ADP1

39.735

100

0.435
  pilA Vibrio cholerae C6706

39.31

100

0.413
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.31

100

0.413
  pilA Vibrio cholerae strain A1552

39.31

100

0.413
  pilA Vibrio parahaemolyticus RIMD 2210633

41.667

95.652

0.399
  pilA/pilA1 Eikenella corrodens VA1

36

100

0.391
  pilA2 Legionella pneumophila strain ERS1305867

37.5

100

0.391
  pilA2 Legionella pneumophila str. Paris

37.762

100

0.391
  pilE Neisseria gonorrhoeae MS11

33.333

100

0.384