Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OCJ37_RS06250 Genome accession   NZ_CP106869
Coordinates   1523158..1524195 (+) Length   345 a.a.
NCBI ID   WP_185815705.1    Uniprot ID   -
Organism   Xanthomonas sp. AM6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518158..1529195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCJ37_RS06225 (OCJ37_06225) - 1518855..1520267 (-) 1413 WP_263112808.1 MFS transporter -
  OCJ37_RS06230 (OCJ37_06230) soxR 1520367..1520804 (+) 438 WP_263112809.1 redox-sensitive transcriptional activator SoxR -
  OCJ37_RS06235 (OCJ37_06235) - 1520979..1521434 (-) 456 WP_263112810.1 DUF4426 domain-containing protein -
  OCJ37_RS06240 (OCJ37_06240) proC 1521450..1522304 (-) 855 WP_263112811.1 pyrroline-5-carboxylate reductase -
  OCJ37_RS06245 (OCJ37_06245) - 1522380..1523069 (-) 690 WP_263112812.1 YggS family pyridoxal phosphate-dependent enzyme -
  OCJ37_RS06250 (OCJ37_06250) pilT 1523158..1524195 (+) 1038 WP_185815705.1 type IV pilus twitching motility protein PilT Machinery gene
  OCJ37_RS06255 (OCJ37_06255) pilU 1524308..1525438 (+) 1131 WP_263112813.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OCJ37_RS06260 (OCJ37_06260) - 1525590..1526852 (+) 1263 WP_263112814.1 WD40 repeat domain-containing protein -
  OCJ37_RS06265 (OCJ37_06265) - 1526849..1528348 (+) 1500 WP_263112815.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38551.20 Da        Isoelectric Point: 6.6653

>NTDB_id=736184 OCJ37_RS06250 WP_185815705.1 1523158..1524195(+) (pilT) [Xanthomonas sp. AM6]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQTGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRVFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=736184 OCJ37_RS06250 WP_185815705.1 1523158..1524195(+) (pilT) [Xanthomonas sp. AM6]
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAGGCGTCCGACCTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTGCGCCGCATCAACATCCCGGCGCTGGACCACAAGCAGGTGCACGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAAGAGTTCCTGGAAGTGGACTTCTCGTTCGAGATTCCCAGCCTGGCGCGC
TTTCGCGTCAACGCGTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGCACGATTCCCTCGGAAGTGCTGACCCTGGA
AGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACGCACGGCTTCAACGA
GGCGCTGCGCTCGGCGCTGCGCGAGGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCGGCCGGCGAGAAGCCGATGGTGCGCTCGATGCTGTCCGAATCGCTGCGCGCGGTGATCTCGCAGGC
GCTGCTGAAGAAGGTCGGCGGCGGCCGCACCGCGGCATGGGAGATCATGGTCGGCACCCCGGCGATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGACCGGCATGCAGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAATCAGGCGCGCGAGTACGCCAAGGACAAGCGCGTGTTCGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

79.07

99.71

0.788
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.351

98.261

0.78
  pilT Legionella pneumophila strain Lp02

75

99.71

0.748
  pilT Legionella pneumophila strain ERS1305867

75

99.71

0.748
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.855

100

0.499
  pilU Pseudomonas stutzeri DSM 10701

40.708

98.261

0.4
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397
  pilU Vibrio cholerae strain A1552

40.597

97.101

0.394