Detailed information NTG0736185

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OCJ37_RS06255
• Genome accession: NZ_CP106869
• Coordinates: 1524308..1525438 (+)
• Length: 376 a.a.
• NCBI ID: WP_263112813.1
• Uniprot ID: -
• Organism: Xanthomonas sp. AM6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1519308..1530438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCJ37_RS06230 (OCJ37_06230)	soxR	1520367..1520804 (+)	438	WP_263112809.1	redox-sensitive transcriptional activator SoxR	-
OCJ37_RS06235 (OCJ37_06235)	-	1520979..1521434 (-)	456	WP_263112810.1	DUF4426 domain-containing protein	-
OCJ37_RS06240 (OCJ37_06240)	proC	1521450..1522304 (-)	855	WP_263112811.1	pyrroline-5-carboxylate reductase	-
OCJ37_RS06245 (OCJ37_06245)	-	1522380..1523069 (-)	690	WP_263112812.1	YggS family pyridoxal phosphate-dependent enzyme	-
OCJ37_RS06250 (OCJ37_06250)	pilT	1523158..1524195 (+)	1038	WP_185815705.1	type IV pilus twitching motility protein PilT	Machinery gene
OCJ37_RS06255 (OCJ37_06255)	pilU	1524308..1525438 (+)	1131	WP_263112813.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OCJ37_RS06260 (OCJ37_06260)	-	1525590..1526852 (+)	1263	WP_263112814.1	WD40 repeat domain-containing protein	-
OCJ37_RS06265 (OCJ37_06265)	-	1526849..1528348 (+)	1500	WP_263112815.1	diguanylate cyclase	-
OCJ37_RS06270 (OCJ37_06270)	-	1528728..1529402 (+)	675	WP_263113605.1	YitT family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41884.20 Da
• Isoelectric Point: 6.8811

>NTDB_id=736185 OCJ37_RS06255 WP_263112813.1 1524308..1525438(+) (pilU) [Xanthomonas sp. AM6]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKITPITQTPLTSQQSRDLVLNVMTPAQREEFEKTHECNFAIGVAG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAISFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRGQLLMDLSLNLRGVVAQQLIPTPDGKGRRVAMEIMLGTPLVQDYIREGEIHKLKDVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRHADSQNEVRLRIKLAQGGDAKTLAQGMDGVEIAEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=736185 OCJ37_RS06255 WP_263112813.1 1524308..1525438(+) (pilU) [Xanthomonas sp. AM6]
ATGAGCACCATCGACTTCACCTCGTTCCTGAAACTGATGGCGCACCAGAAGGCGTCGGACCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCACCCCGATCACGCAGACGCCGCTGACCTCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACCCCGGCGCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCAACTTCGCCATCGGCGTGGCCGGG
GTGGGGCGCTTCCGCGTCAGCTGCTTCTACCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATCGAGACGCGCATCCC
CACCGTCGACGAACTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGCCACATCATCACC
ATCGAGGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAG
CTGGGAGAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAGGGCA
TGGACCACGCGATCTCCTTCGCCGAGACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAGGACCGCCGCGGCCAGCTGCTGATGGACCTGTCGCTGAACCTGCGCGGCGTGGT
CGCGCAGCAGCTGATCCCCACGCCCGACGGCAAGGGCCGCCGCGTGGCGATGGAGATCATGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGAGGGCGAGATCCACAAGCTCAAGGACGTGATGAAGGAATCCACCAACCTGGGCATGAAGACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCCACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCCAAGACCCTGGCCCAGGGCATGGACGGGGTGGAGATCGCGG
AGGTGCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	65.854	98.138	0.646
pilU	Acinetobacter baylyi ADP1	63.585	94.947	0.604
pilU	Vibrio cholerae strain A1552	53.652	94.681	0.508
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.571	93.085	0.396
pilT	Pseudomonas aeruginosa PAK	41.003	90.16	0.37
pilT	Acinetobacter nosocomialis M2	40.407	91.489	0.37
pilT	Acinetobacter baumannii D1279779	40.407	91.489	0.37
pilT	Acinetobacter baumannii strain A118	40.407	91.489	0.37