Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   P4831_RS05580 Genome accession   NZ_CP120842
Coordinates   1067811..1068491 (+) Length   226 a.a.
NCBI ID   WP_003131898.1    Uniprot ID   Q9CGT5
Organism   Lactococcus lactis strain ZFM559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1062811..1073491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS05560 - 1063175..1063690 (+) 516 WP_058220544.1 DUF2127 domain-containing protein -
  P4831_RS05565 - 1063694..1065019 (+) 1326 WP_003131891.1 HAMP domain-containing sensor histidine kinase -
  P4831_RS05570 - 1065026..1065682 (+) 657 WP_023164053.1 phosphatase PAP2 family protein -
  P4831_RS05575 glmS 1065863..1067680 (+) 1818 WP_010905678.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  P4831_RS05580 radC 1067811..1068491 (+) 681 WP_003131898.1 DNA repair protein RadC Machinery gene
  P4831_RS05585 - 1068579..1069229 (-) 651 WP_021464703.1 redox-sensing transcriptional repressor Rex -
  P4831_RS05590 - 1069454..1069846 (+) 393 WP_003132739.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  P4831_RS05595 - 1070024..1071931 (+) 1908 WP_003132741.1 ABC-F family ATP-binding cassette domain-containing protein -
  P4831_RS05600 - 1072120..1072920 (+) 801 WP_023164054.1 hypothetical protein -
  P4831_RS05605 - 1072985..1073287 (+) 303 WP_225210391.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25801.67 Da        Isoelectric Point: 7.9247

>NTDB_id=734481 P4831_RS05580 WP_003131898.1 1067811..1068491(+) (radC) [Lactococcus lactis strain ZFM559]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=734481 P4831_RS05580 WP_003131898.1 1067811..1068491(+) (radC) [Lactococcus lactis strain ZFM559]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTAAAACCAAGTCAAGCTGA
TAAAATATTTACTACCAAAATAAAAAAATCTTGCGAGGATGTGGGGATCAATTTTATTGATCATATTATTGTAGGGGCTG
GTAATTATTTTAGCTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(5-80)

RadC-like JAB domain (RadC)

(115-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CGT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.045

98.23

0.442
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.541

98.23

0.398