Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   N5P16_RS14565 Genome accession   NZ_CP104734
Coordinates   3139510..3140544 (+) Length   344 a.a.
NCBI ID   WP_011182164.1    Uniprot ID   A0A7G2SBU6
Organism   Acinetobacter baylyi strain JAT2044     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3134510..3145544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS14550 (N5P16_14550) - 3136821..3137606 (+) 786 WP_004922040.1 transglutaminase-like domain-containing protein -
  N5P16_RS14555 (N5P16_14555) - 3137702..3138559 (-) 858 WP_011182166.1 undecaprenyl-diphosphate phosphatase -
  N5P16_RS14560 (N5P16_14560) - 3138696..3139385 (-) 690 WP_004922045.1 YggS family pyridoxal phosphate-dependent enzyme -
  N5P16_RS14565 (N5P16_14565) pilT 3139510..3140544 (+) 1035 WP_011182164.1 type IV pilus twitching motility protein PilT Machinery gene
  N5P16_RS14570 (N5P16_14570) pilU 3140581..3141732 (+) 1152 WP_004922051.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  N5P16_RS14575 (N5P16_14575) fur 3141778..3142218 (-) 441 WP_004922054.1 ferric iron uptake transcriptional regulator -
  N5P16_RS14580 (N5P16_14580) - 3142330..3142728 (+) 399 WP_004922056.1 outer membrane protein assembly factor BamE -
  N5P16_RS14585 (N5P16_14585) - 3142784..3143095 (-) 312 WP_004922060.1 RnfH family protein -
  N5P16_RS14590 (N5P16_14590) - 3143092..3144177 (-) 1086 WP_004922063.1 hypothetical protein -
  N5P16_RS14595 (N5P16_14595) - 3144276..3145124 (-) 849 WP_026056952.1 class II glutamine amidotransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38336.01 Da        Isoelectric Point: 6.2870

>NTDB_id=731708 N5P16_RS14565 WP_011182164.1 3139510..3140544(+) (pilT) [Acinetobacter baylyi strain JAT2044]
MDITELLAFSVQNRASDLHLSAGIPPMIRVDGEVRRINLPAMDHSEVHNLIYDIMNDKQRRDYEEKLETDFSFEVPNLAR
FRVNVFNQNRGAGAVFRTIPSQVLTLEELGLGKIFRDICDYPRGLVLVTGPTGSGKSTTLAAMLDYINNHRYDHILTVED
PIEFVHEPKKCLINQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPAEEKDMVRTMLSESLQAVISQTLLKKEGGGRVAAHEIMIGIPAIRNLIREGKVAQMYSSIQTGATHGMTTLDQSL
KQLLAKGIINLPTARAVAKSPESF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=731708 N5P16_RS14565 WP_011182164.1 3139510..3140544(+) (pilT) [Acinetobacter baylyi strain JAT2044]
ATGGATATAACAGAATTACTCGCGTTTTCGGTGCAAAATCGTGCCTCTGACCTGCATTTATCCGCAGGAATTCCCCCCAT
GATCCGTGTCGATGGCGAAGTTCGTCGTATTAATCTTCCTGCAATGGATCATTCAGAAGTCCATAATCTCATTTACGATA
TTATGAATGATAAACAGCGCCGAGACTACGAAGAAAAACTGGAAACAGATTTTTCTTTTGAAGTGCCTAATCTAGCTCGT
TTTCGCGTCAATGTGTTTAATCAAAATCGTGGAGCTGGTGCTGTATTTCGGACCATTCCATCACAAGTTCTGACGCTTGA
AGAACTGGGACTGGGTAAAATTTTTCGGGATATTTGCGATTATCCGAGAGGACTCGTCCTTGTCACAGGCCCCACTGGTT
CCGGTAAATCAACCACCCTTGCAGCCATGCTCGATTATATTAACAATCATCGCTACGACCATATTTTGACTGTTGAAGAT
CCAATTGAGTTTGTACATGAGCCTAAAAAATGCCTGATCAATCAGCGTGAGGTACATCGCGATACATTAGGCTTCAATGA
AGCACTGCGCTCAGCTTTGCGTGAAGATCCAGACATTATTCTGGTTGGCGAAATGCGGGATCTGGAAACCATCCGTCTGG
CTCTTACTGCCGCAGAAACAGGGCATTTGGTTTTTGGAACACTGCATACCACATCAGCCGCGAAAACCATTGATCGTATT
ATTGATGTCTTTCCTGCCGAAGAAAAAGATATGGTTCGCACCATGTTGTCGGAATCCTTACAAGCGGTTATTTCCCAAAC
TTTATTAAAAAAAGAAGGCGGTGGACGTGTTGCAGCCCATGAAATCATGATTGGAATTCCTGCAATTCGCAATCTCATTC
GTGAAGGTAAAGTCGCTCAAATGTACTCTTCTATCCAAACAGGTGCGACACATGGCATGACGACCCTGGATCAGAGTCTC
AAACAGCTTTTGGCAAAAGGCATCATCAACTTACCAACGGCACGCGCTGTCGCAAAATCTCCAGAGTCGTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SBU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

100

100

1
  pilT Acinetobacter baumannii D1279779

88.953

100

0.89
  pilT Acinetobacter baumannii strain A118

88.953

100

0.89
  pilT Acinetobacter nosocomialis M2

88.663

100

0.887
  pilT Pseudomonas stutzeri DSM 10701

83.43

100

0.834
  pilT Pseudomonas aeruginosa PAK

81.686

100

0.817
  pilT Legionella pneumophila strain Lp02

73.256

100

0.733
  pilT Legionella pneumophila strain ERS1305867

73.256

100

0.733
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.424

95.93

0.695
  pilT Vibrio cholerae strain A1552

72.424

95.93

0.695
  pilT Neisseria meningitidis 8013

67.536

100

0.677
  pilT Neisseria gonorrhoeae MS11

67.246

100

0.674
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.884

100

0.52
  pilU Vibrio cholerae strain A1552

42.462

94.477

0.401
  pilU Acinetobacter baylyi ADP1

38.439

100

0.387
  pilU Pseudomonas stutzeri DSM 10701

39.701

97.384

0.387