Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | NRS07_RS04905 | Genome accession | NZ_CP103371 |
| Coordinates | 1097284..1098327 (-) | Length | 347 a.a. |
| NCBI ID | WP_259211546.1 | Uniprot ID | - |
| Organism | Massilia sp. H6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1092284..1103327
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NRS07_RS04895 (NRS07_04895) | - | 1094133..1095836 (-) | 1704 | WP_259211544.1 | methyl-accepting chemotaxis protein | - |
| NRS07_RS04900 (NRS07_04900) | pilU | 1096138..1097274 (-) | 1137 | WP_259211545.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| NRS07_RS04905 (NRS07_04905) | pilT | 1097284..1098327 (-) | 1044 | WP_259211546.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| NRS07_RS04910 (NRS07_04910) | - | 1098405..1099106 (+) | 702 | WP_259211547.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| NRS07_RS04915 (NRS07_04915) | proC | 1099125..1099940 (+) | 816 | WP_259211548.1 | pyrroline-5-carboxylate reductase | - |
| NRS07_RS04920 (NRS07_04920) | - | 1099999..1102203 (-) | 2205 | WP_307729919.1 | S8 family serine peptidase | - |
| NRS07_RS04925 (NRS07_04925) | - | 1102475..1102777 (-) | 303 | WP_259211549.1 | hypothetical protein | - |
| NRS07_RS04930 (NRS07_04930) | - | 1102767..1103144 (-) | 378 | WP_259211550.1 | phage holin family protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38058.78 Da Isoelectric Point: 6.7268
>NTDB_id=722366 NRS07_RS04905 WP_259211546.1 1097284..1098327(-) (pilT) [Massilia sp. H6]
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKQYEEILECDFSFAIPGLAR
FRVNAFNQERGASAVLRTIPSKILSLEELNAPKIFGELAMRPRGLVLVTGPTGSGKSTTLAAMVNHLNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFSNALRSALREDPDAILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPGEEKEMVRAMLSESLQAVISQTLLKTKDGLGRVAAHEIMIGTPAIRNLIREAKIAQMYSSIQTGSNVGMQTLDQN
LTDLVRRNVISSAAARTAAKIPENFLG
MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQRKQYEEILECDFSFAIPGLAR
FRVNAFNQERGASAVLRTIPSKILSLEELNAPKIFGELAMRPRGLVLVTGPTGSGKSTTLAAMVNHLNENEYGHILTIED
PIEFVHDSKKCLINQREVGPHTLSFSNALRSALREDPDAILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI
VDVFPGEEKEMVRAMLSESLQAVISQTLLKTKDGLGRVAAHEIMIGTPAIRNLIREAKIAQMYSSIQTGSNVGMQTLDQN
LTDLVRRNVISSAAARTAAKIPENFLG
Nucleotide
Download Length: 1044 bp
>NTDB_id=722366 NRS07_RS04905 WP_259211546.1 1097284..1098327(-) (pilT) [Massilia sp. H6]
ATGGACATTTCAGAACTGCTCGCGTTCTCCGTGAAGAACAAGGCCTCGGACCTGCACCTCTCGGCCGGCCTGCCGCCGAT
GATCCGCGTGCATGGCGACGTGCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGCAGTACGAAGAGATTCTGGAATGCGACTTCTCGTTCGCCATTCCCGGCCTGGCGCGC
TTTCGCGTCAACGCATTCAACCAGGAGCGCGGCGCGTCCGCGGTGCTGCGCACCATTCCCTCGAAGATCCTGTCGCTCGA
AGAGCTCAATGCGCCGAAGATCTTCGGCGAACTGGCCATGCGCCCGCGCGGCCTGGTGCTGGTGACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTCAACCACCTGAACGAAAACGAGTACGGCCACATCCTGACCATCGAGGAC
CCGATCGAATTCGTCCACGATTCCAAGAAATGCCTGATCAACCAGCGCGAAGTAGGCCCCCACACGCTATCGTTCAGCAA
CGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACGCGATCCTGGTGGGCGAGCTGCGCGACCTGGAAACCATTCGCCTGG
CGCTGTCGGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCGTCGGCCGCCAAGACCATCGACCGTATC
GTCGACGTATTCCCCGGCGAGGAAAAAGAGATGGTGCGCGCGATGCTGTCGGAGTCGCTGCAGGCCGTGATTTCGCAGAC
CCTGCTCAAGACCAAGGACGGCCTGGGGCGCGTGGCTGCGCACGAGATCATGATCGGCACTCCCGCGATCCGTAACCTGA
TCCGCGAAGCGAAGATCGCGCAGATGTATTCGAGCATCCAGACCGGCAGCAATGTCGGCATGCAGACGCTCGACCAGAAC
CTGACCGACCTGGTGCGACGCAACGTGATCTCCAGTGCCGCCGCCCGCACCGCCGCCAAGATTCCAGAAAACTTCCTCGG
TTAA
ATGGACATTTCAGAACTGCTCGCGTTCTCCGTGAAGAACAAGGCCTCGGACCTGCACCTCTCGGCCGGCCTGCCGCCGAT
GATCCGCGTGCATGGCGACGTGCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGGACGTGCACGGCATGATCTATGACA
TCATGAACGACGGCCAGCGCAAGCAGTACGAAGAGATTCTGGAATGCGACTTCTCGTTCGCCATTCCCGGCCTGGCGCGC
TTTCGCGTCAACGCATTCAACCAGGAGCGCGGCGCGTCCGCGGTGCTGCGCACCATTCCCTCGAAGATCCTGTCGCTCGA
AGAGCTCAATGCGCCGAAGATCTTCGGCGAACTGGCCATGCGCCCGCGCGGCCTGGTGCTGGTGACCGGCCCGACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGGTCAACCACCTGAACGAAAACGAGTACGGCCACATCCTGACCATCGAGGAC
CCGATCGAATTCGTCCACGATTCCAAGAAATGCCTGATCAACCAGCGCGAAGTAGGCCCCCACACGCTATCGTTCAGCAA
CGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACGCGATCCTGGTGGGCGAGCTGCGCGACCTGGAAACCATTCGCCTGG
CGCTGTCGGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCTCGTCGGCCGCCAAGACCATCGACCGTATC
GTCGACGTATTCCCCGGCGAGGAAAAAGAGATGGTGCGCGCGATGCTGTCGGAGTCGCTGCAGGCCGTGATTTCGCAGAC
CCTGCTCAAGACCAAGGACGGCCTGGGGCGCGTGGCTGCGCACGAGATCATGATCGGCACTCCCGCGATCCGTAACCTGA
TCCGCGAAGCGAAGATCGCGCAGATGTATTCGAGCATCCAGACCGGCAGCAATGTCGGCATGCAGACGCTCGACCAGAAC
CTGACCGACCTGGTGCGACGCAACGTGATCTCCAGTGCCGCCGCCCGCACCGCCGCCAAGATTCCAGAAAACTTCCTCGG
TTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
77.168 |
99.712 |
0.769 |
| pilT | Acinetobacter baumannii D1279779 |
77.168 |
99.712 |
0.769 |
| pilT | Acinetobacter baumannii strain A118 |
77.168 |
99.712 |
0.769 |
| pilT | Pseudomonas aeruginosa PAK |
77.101 |
99.424 |
0.767 |
| pilT | Pseudomonas stutzeri DSM 10701 |
75.652 |
99.424 |
0.752 |
| pilT | Acinetobacter baylyi ADP1 |
74.493 |
99.424 |
0.741 |
| pilT | Legionella pneumophila strain Lp02 |
75.221 |
97.695 |
0.735 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.221 |
97.695 |
0.735 |
| pilT | Neisseria gonorrhoeae MS11 |
69.275 |
99.424 |
0.689 |
| pilT | Neisseria meningitidis 8013 |
69.275 |
99.424 |
0.689 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.88 |
95.677 |
0.669 |
| pilT | Vibrio cholerae strain A1552 |
69.88 |
95.677 |
0.669 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.594 |
99.424 |
0.513 |
| pilU | Acinetobacter baylyi ADP1 |
42.486 |
99.712 |
0.424 |
| pilU | Vibrio cholerae strain A1552 |
41.298 |
97.695 |
0.403 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.493 |
96.542 |
0.401 |