Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NRZ30_RS09915 Genome accession   NZ_CP102367
Coordinates   2184153..2185187 (-) Length   344 a.a.
NCBI ID   WP_005340354.1    Uniprot ID   -
Organism   Aeromonas jandaei strain BC17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2179153..2190187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ30_RS09885 (NRZ30_09885) glnK 2179787..2180125 (-) 339 WP_268018162.1 P-II family nitrogen regulator -
  NRZ30_RS09890 (NRZ30_09890) arfB 2180327..2180743 (+) 417 WP_033114047.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  NRZ30_RS09895 (NRZ30_09895) - 2180765..2181256 (+) 492 WP_268018163.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NRZ30_RS09900 (NRZ30_09900) - 2181571..2181999 (-) 429 WP_043849992.1 hypothetical protein -
  NRZ30_RS09905 (NRZ30_09905) yaaA 2182194..2182967 (-) 774 WP_268018164.1 peroxide stress protein YaaA -
  NRZ30_RS09910 (NRZ30_09910) pilU 2183015..2184124 (-) 1110 WP_201912858.1 type IVa pilus ATPase TapU Machinery gene
  NRZ30_RS09915 (NRZ30_09915) pilT 2184153..2185187 (-) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  NRZ30_RS09920 (NRZ30_09920) - 2185227..2185928 (+) 702 WP_156853921.1 YggS family pyridoxal phosphate-dependent enzyme -
  NRZ30_RS09925 (NRZ30_09925) proC 2185995..2186822 (+) 828 WP_268018165.1 pyrroline-5-carboxylate reductase -
  NRZ30_RS09930 (NRZ30_09930) - 2186834..2187385 (+) 552 WP_042031658.1 YggT family protein -
  NRZ30_RS09935 (NRZ30_09935) yggU 2187385..2187684 (+) 300 WP_033114039.1 DUF167 family protein YggU -
  NRZ30_RS09940 (NRZ30_09940) - 2187714..2188133 (+) 420 WP_268018166.1 DUF4426 domain-containing protein -
  NRZ30_RS09945 (NRZ30_09945) - 2188236..2189432 (-) 1197 WP_033114037.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38273.03 Da        Isoelectric Point: 6.7440

>NTDB_id=716525 NRZ30_RS09915 WP_005340354.1 2184153..2185187(-) (pilT) [Aeromonas jandaei strain BC17]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=716525 NRZ30_RS09915 WP_005340354.1 2184153..2185187(-) (pilT) [Aeromonas jandaei strain BC17]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCGTCGGATCTACACCTGTCCGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGCGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACATCGGGAAGTGCACGCCCTCATTTACGACA
TCATGAACGATCACCAGCGCAAGGAGCTGGAGGAGAACTTCGAGGTCGACTTCTCGTTCGAGGTGCCCAATCTGGCCCGC
TTCCGGGTCAACGCCTTCCAGCAAGCGCGCGGTTCCGGCGCGGTATTTCGTACCATCCCCAGCACCGTGCTGAGTCTCGA
AGATCTCGATGCGCCGGAGATCTTCCGCAAGATCGCCGAGTTCCCGCGTGGTCTGGTGCTGGTGACCGGGCCGACCGGTT
CCGGTAAGTCGACCACGCTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCATATTCTCACCATCGAAGAC
CCCATCGAATTTGTGCACGAGAACAAGCGCTGTCTGGTGAACCAGCGGGAAGTGCACCGCGATACCAAGAGTTTCAGCAA
TGCCCTGCGCTCGGCACTACGGGAAGACCCGGACATCATTCTGGTGGGCGAGATGCGCGATCTTGAAACCATTCGCCTCG
CCATGACCGCAGCTGAAACTGGCCATTTGGTGTTTGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGTATC
ATCGACGTCTTCCCCGGCGCAGAGAAGGACATGGTGCGCTCCATGCTCTCCGAATCGCTGCGCGCGGTTATCTCCCAGAC
CCTGCTCAAGCGCATTGGCGGCGGTCGGGTGGCAGCCCACGAGATCATGATGGGGATCCCGGCGGTGCGTAATCTCATCC
GGGAGGACAAGATCGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGTCTC
AAACAGCTGGTGAGTCGCGGCGTGGTGGCATCTCTCGACGCCAAGGCCAAGGCGGTTGACCCCAACAGCATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.551

99.709

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.163

100

0.762
  pilT Pseudomonas aeruginosa PAK

75.291

100

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.964

97.965

0.744
  pilT Vibrio cholerae strain A1552

75.964

97.965

0.744
  pilT Legionella pneumophila strain Lp02

72.941

98.837

0.721
  pilT Legionella pneumophila strain ERS1305867

72.941

98.837

0.721
  pilT Neisseria meningitidis 8013

69.855

100

0.701
  pilT Neisseria gonorrhoeae MS11

69.565

100

0.698
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407