Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NRL37_RS01900 Genome accession   NZ_CP102328
Coordinates   381216..382250 (+) Length   344 a.a.
NCBI ID   WP_142012818.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain BC12     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376216..387250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRL37_RS01875 (NRL37_01875) - 377448..377744 (-) 297 WP_172432360.1 DUF167 domain-containing protein -
  NRL37_RS01880 (NRL37_01880) - 377744..378337 (-) 594 WP_107330252.1 YggT family protein -
  NRL37_RS01885 (NRL37_01885) - 378429..379616 (-) 1188 WP_268193840.1 hypothetical protein -
  NRL37_RS01890 (NRL37_01890) proC 379619..380437 (-) 819 WP_074967198.1 pyrroline-5-carboxylate reductase -
  NRL37_RS01895 (NRL37_01895) - 380455..381147 (-) 693 WP_268193841.1 YggS family pyridoxal phosphate-dependent enzyme -
  NRL37_RS01900 (NRL37_01900) pilT 381216..382250 (+) 1035 WP_142012818.1 type IV pilus twitching motility protein PilT Machinery gene
  NRL37_RS01905 (NRL37_01905) pilU 382359..383504 (+) 1146 WP_044403589.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  NRL37_RS27995 - 383446..384891 (-) 1446 WP_326493229.1 TIGR03915 family putative DNA repair protein -
  NRL37_RS01920 (NRL37_01920) - 384891..386102 (-) 1212 WP_268193842.1 putative DNA modification/repair radical SAM protein -
  NRL37_RS01925 (NRL37_01925) - 386209..386604 (+) 396 WP_074967204.1 NINE protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37851.60 Da        Isoelectric Point: 6.8360

>NTDB_id=716186 NRL37_RS01900 WP_142012818.1 381216..382250(+) (pilT) [Metapseudomonas otitidis strain BC12]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLDHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLSMEDLGMGEIFKKISDVPRGLVLVTGPTGSGKSTTLAAMLDYLNGTKYHHILTVED
PIEFVHESKKCLINQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGALGMQTLDSCL
KGLVAKGLVSRESAREKAKTPENF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=716186 NRL37_RS01900 WP_142012818.1 381216..382250(+) (pilT) [Metapseudomonas otitidis strain BC12]
ATGGATATTACTGAGCTGCTTGCGTTCAGCGCCAAGCAGGGCGCTTCGGACCTGCATCTCTCGGCCGGGCTGCCGCCCAT
GATCCGCGTCGACGGTGATGTTCGCCGTATCAACCTGCCCCCCCTGGACCACAAGCAGGTGCACGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAGGAATTCCTCGAAACCGACTTCTCGTTCGAGGTGCCCGGCGTGGCCCGC
TTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTGCTGTCCATGGA
GGACCTGGGCATGGGTGAGATCTTCAAGAAGATCTCCGACGTGCCGCGCGGCCTGGTGCTGGTCACCGGCCCCACCGGTT
CGGGCAAGTCCACCACCCTGGCGGCGATGCTCGACTACCTCAACGGCACCAAGTACCACCACATCCTGACCGTGGAAGAC
CCGATCGAATTCGTCCACGAGTCGAAGAAGTGCCTGATCAACCAGCGTGAGGTGCACCGCGACACCCTCGGCTTCAACGA
GGCGCTGCGCTCGGCCCTGCGGGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGTGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGGGTG
GTCGACGTGTTCCCGGCCGAGGAAAAATCCATGGTGCGCTCCATGCTCTCCGAATCCCTGCAGGCGGTCATTTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCCGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCGCCATCCAGACCGGCGGCGCCCTGGGCATGCAGACCCTGGACAGCTGCCTG
AAGGGCCTGGTGGCCAAGGGCCTGGTCAGCCGCGAAAGCGCGCGCGAAAAGGCCAAGACGCCGGAAAACTTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

94.477

100

0.945
  pilT Pseudomonas stutzeri DSM 10701

94.186

100

0.942
  pilT Acinetobacter baumannii D1279779

86.047

100

0.86
  pilT Acinetobacter baumannii strain A118

86.047

100

0.86
  pilT Acinetobacter nosocomialis M2

85.756

100

0.858
  pilT Acinetobacter baylyi ADP1

83.14

100

0.831
  pilT Legionella pneumophila strain Lp02

76.627

98.256

0.753
  pilT Legionella pneumophila strain ERS1305867

76.627

98.256

0.753
  pilT Neisseria meningitidis 8013

68.406

100

0.686
  pilT Neisseria gonorrhoeae MS11

68.116

100

0.683
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.436

97.965

0.68
  pilT Vibrio cholerae strain A1552

69.436

97.965

0.68
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.523
  pilU Acinetobacter baylyi ADP1

39.884

100

0.401
  pilU Vibrio cholerae strain A1552

39.42

100

0.395
  pilU Pseudomonas stutzeri DSM 10701

40

97.384

0.39