Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NRK98_RS00270 Genome accession   NZ_CP102325
Coordinates   48826..49860 (-) Length   344 a.a.
NCBI ID   WP_005305010.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BC03     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 43826..54860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK98_RS00250 (NRK98_00250) - 44644..45354 (-) 711 WP_268028050.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NRK98_RS00255 (NRK98_00255) srmB 45483..46706 (+) 1224 WP_268028051.1 ATP-dependent RNA helicase SrmB -
  NRK98_RS00260 (NRK98_00260) yaaA 46883..47656 (-) 774 WP_017783834.1 peroxide stress protein YaaA -
  NRK98_RS00265 (NRK98_00265) pilU 47688..48797 (-) 1110 WP_019838905.1 type IVa pilus ATPase TapU Machinery gene
  NRK98_RS00270 (NRK98_00270) pilT 48826..49860 (-) 1035 WP_005305010.1 type IVa pilus ATPase TapT Machinery gene
  NRK98_RS00275 (NRK98_00275) - 49900..50601 (+) 702 WP_010636180.1 YggS family pyridoxal phosphate-dependent enzyme -
  NRK98_RS00280 (NRK98_00280) proC 50662..51486 (+) 825 WP_005305003.1 pyrroline-5-carboxylate reductase -
  NRK98_RS00285 (NRK98_00285) - 51527..52078 (+) 552 WP_017780458.1 YggT family protein -
  NRK98_RS00290 (NRK98_00290) yggU 52078..52377 (+) 300 WP_005304998.1 DUF167 family protein YggU -
  NRK98_RS00295 (NRK98_00295) - 52396..52815 (+) 420 WP_005304995.1 DUF4426 domain-containing protein -
  NRK98_RS00300 (NRK98_00300) - 52879..53190 (-) 312 WP_005304992.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38319.12 Da        Isoelectric Point: 6.7439

>NTDB_id=716101 NRK98_RS00270 WP_005305010.1 48826..49860(-) (pilT) [Aeromonas dhakensis strain BC03]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGMVAALDAKAKAVDPNTI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=716101 NRK98_RS00270 WP_005305010.1 48826..49860(-) (pilT) [Aeromonas dhakensis strain BC03]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAACATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGCGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAGCATCGGGAAGTACACGCCCTCATCTATGACA
TCATGAACGACCACCAGCGCAAGGAACTGGAAGAGAACTTCGAGGTGGACTTCTCGTTCGAGGTGCCGAACCTCGCTCGC
TTCCGGGTCAACGCCTTCCAGCAGGCGCGCGGCTCCGGCGCGGTATTTCGGACCATCCCCAGCACAGTACTGAGCCTGGA
AGATCTTGATGCCCCGGAGATCTTTCGCAAGATTGCCGAATACCCCCGCGGCCTGGTGCTGGTGACCGGTCCGACCGGTT
CGGGCAAGTCCACTACCTTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCACATCCTCACCATCGAGGAT
CCCATCGAATTCGTGCACGAAAACAAACGCTGCCTGGTAAACCAGCGGGAAGTGCACCGCGACACCAAGAGCTTCAGCAA
CGCCCTGCGCTCGGCGCTGCGGGAAGACCCGGACATCATACTGGTGGGCGAGATGCGCGATCTGGAAACCATTCGTCTGG
CCATGACCGCGGCCGAGACCGGTCACCTGGTGTTCGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGGATC
ATCGACGTCTTCCCCGGTGCGGAAAAAGACATGGTGCGCTCCATGCTCTCCGAATCGTTGCGGGCGGTCATCTCCCAGAC
CCTGCTCAAGCGCATCGGCGGCGGCCGGGTAGCGGCTCACGAGATCATGATGGGTATTCCTGCCGTGCGAAACCTCATCC
GGGAGGACAAGATCGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGCCGCGGCATGGTGGCGGCGCTGGATGCCAAGGCCAAGGCGGTCGATCCCAACACCATCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

77.326

100

0.773
  pilT Acinetobacter nosocomialis M2

77.035

100

0.77
  pilT Acinetobacter baumannii D1279779

76.744

100

0.767
  pilT Acinetobacter baumannii strain A118

76.744

100

0.767
  pilT Pseudomonas stutzeri DSM 10701

76.833

99.128

0.762
  pilT Pseudomonas aeruginosa PAK

75.953

99.128

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

76.261

97.965

0.747
  pilT Vibrio cholerae strain A1552

76.261

97.965

0.747
  pilT Legionella pneumophila strain Lp02

72.647

98.837

0.718
  pilT Legionella pneumophila strain ERS1305867

72.647

98.837

0.718
  pilT Neisseria meningitidis 8013

70.796

98.547

0.698
  pilT Neisseria gonorrhoeae MS11

70.501

98.547

0.695
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407