Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NP429_RS04640 Genome accession   NZ_CP101925
Coordinates   944575..945555 (+) Length   326 a.a.
NCBI ID   WP_001443100.1    Uniprot ID   -
Organism   Escherichia coli strain Seattle 1946     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 939575..950555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP429_RS04610 (NP429_04610) yggM 940176..941183 (+) 1008 WP_000745192.1 DUF1202 family protein -
  NP429_RS04615 (NP429_04615) hemW 941252..942388 (-) 1137 WP_000239974.1 radical SAM family heme chaperone HemW -
  NP429_RS04620 (NP429_04620) rdgB 942381..942974 (-) 594 WP_001174738.1 XTP/dITP diphosphatase -
  NP429_RS04625 (NP429_04625) yggU 942982..943272 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  NP429_RS04630 (NP429_04630) yggT 943269..943835 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  NP429_RS04635 (NP429_04635) yggS 943853..944557 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  NP429_RS04640 (NP429_04640) pilT 944575..945555 (+) 981 WP_001443100.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  NP429_RS04645 (NP429_04645) ruvX 945729..946145 (-) 417 WP_000017105.1 Holliday junction resolvase RuvX -
  NP429_RS04650 (NP429_04650) yqgE 946145..946708 (-) 564 WP_001053178.1 YqgE/AlgH family protein -
  NP429_RS04655 (NP429_04655) gshB 946817..947767 (-) 951 WP_000593259.1 glutathione synthase -
  NP429_RS04660 (NP429_04660) rsmE 947780..948511 (-) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NP429_RS04665 (NP429_04665) endA 948591..949298 (-) 708 WP_001327408.1 deoxyribonuclease I -
  NP429_RS04670 (NP429_04670) yggI 949393..949890 (-) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36073.30 Da        Isoelectric Point: 5.9975

>NTDB_id=712946 NP429_RS04640 WP_001443100.1 944575..945555(+) (pilT) [Escherichia coli strain Seattle 1946]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYTSQRCLIQQREIGLHCMTFTSGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=712946 NP429_RS04640 WP_001443100.1 944575..945555(+) (pilT) [Escherichia coli strain Seattle 1946]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATACGCGGCAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCACAACGGCAAGGTATTTCTCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATACCAGTCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACTTTCACATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGATAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCGACATTACACACGCGCGGCGCAGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGTTGTCACAAAAACTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.476

100

0.488
  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365
  pilB Legionella pneumophila strain ERS1305867

30.89

100

0.362