Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | NNL22_RS01430 | Genome accession | NZ_CP101527 |
| Coordinates | 305953..306987 (+) | Length | 344 a.a. |
| NCBI ID | WP_251810848.1 | Uniprot ID | - |
| Organism | Alkalimarinus sediminis strain FA028 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 300953..311987
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NNL22_RS01410 (NNL22_01405) | - | 301020..302984 (-) | 1965 | WP_251810855.1 | dynamin family protein | - |
| NNL22_RS01415 (NNL22_01410) | - | 303303..303890 (-) | 588 | WP_251810853.1 | YggT family protein | - |
| NNL22_RS01420 (NNL22_01415) | proC | 304082..304912 (-) | 831 | WP_251810852.1 | pyrroline-5-carboxylate reductase | - |
| NNL22_RS01425 (NNL22_01420) | - | 305065..305760 (-) | 696 | WP_251810850.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| NNL22_RS01430 (NNL22_01425) | pilT | 305953..306987 (+) | 1035 | WP_251810848.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| NNL22_RS01435 (NNL22_01430) | pilU | 307071..308192 (+) | 1122 | WP_251810847.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| NNL22_RS01440 (NNL22_01435) | polA | 308320..311067 (-) | 2748 | WP_251810846.1 | DNA polymerase I | - |
| NNL22_RS01445 (NNL22_01440) | - | 311127..311426 (+) | 300 | WP_251810844.1 | DUF2782 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38051.83 Da Isoelectric Point: 6.2435
>NTDB_id=710390 NNL22_RS01430 WP_251810848.1 305953..306987(+) (pilT) [Alkalimarinus sediminis strain FA028]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPMEHKEVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDVAAVPRGLVLVTGPTGSGKSTTLAAMIDFINDNRYDHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPANEKAMVRSMLSESLQAVISQTLMKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGAQLGMQTLDQCL
TNLLQKGLITREAAREKAKMPENF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPMEHKEVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGQVFKDVAAVPRGLVLVTGPTGSGKSTTLAAMIDFINDNRYDHILTIED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPANEKAMVRSMLSESLQAVISQTLMKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGAQLGMQTLDQCL
TNLLQKGLITREAAREKAKMPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=710390 NNL22_RS01430 WP_251810848.1 305953..306987(+) (pilT) [Alkalimarinus sediminis strain FA028]
ATGGATATTACGGAACTATTAGCATTTTCTGCCAAACAAGGCGCTTCTGATTTACACCTATCGGCGGGTTTGCCTCCGAT
GATTCGTGTTGACGGCGATGTACGACGTATCAATCTGCCACCTATGGAACATAAAGAGGTGCACGCACTGATTTATGACA
TCATGAATGATAAGCAGCGAAAGGACTTTGAAGAGTTTCTTGAGACGGATTTCTCGTTTGAAGTACCAGGCGTTGCTCGA
TTCCGTGTTAACGCATTTAACCAAAATCGCGGTGCCGGTGCTGTATTCCGAACCATCCCATCCAAGGTATTAACCATGGA
AGATCTGGGGATGGGGCAGGTATTTAAAGATGTGGCAGCTGTTCCTCGTGGACTTGTGTTGGTAACGGGCCCAACCGGTT
CGGGTAAATCTACAACTCTGGCGGCTATGATTGATTTCATTAACGACAACCGTTATGACCATATTCTAACCATCGAAGAT
CCGATAGAATTTGTACACGAAAGTAAAAAATGCCTAGTTAACCAACGCGAAGTTCACCGTGACACCCTCGGGTTTAATGA
AGCACTTCGTTCGGCGCTTCGTGAAGATCCCGATATTATCTTGGTGGGTGAGCTTCGAGATCTTGAAACCATTCGTTTGG
CGTTGACCGCTGCTGAAACGGGTCACTTGGTATTTGGTACATTGCACACCACCTCTGCAGCCAAAACCATTGACCGAGTT
GTTGACGTATTCCCTGCGAATGAAAAAGCGATGGTTCGGTCGATGCTGTCAGAGTCACTACAAGCGGTTATCTCACAAAC
CCTGATGAAAAAAGTAGGCGGTGGTCGAGTAGCGGCGCATGAGATTATGATCGGAACCCCCGCGATCAGAAACCTGATTC
GAGAAGACAAAGTGGCGCAGATGTACTCCGCTATTCAAACCGGCGCTCAGTTGGGTATGCAGACGCTTGACCAGTGTTTA
ACCAACTTGCTTCAGAAAGGGCTTATTACGCGAGAAGCGGCCAGAGAAAAAGCTAAAATGCCAGAGAACTTCTAA
ATGGATATTACGGAACTATTAGCATTTTCTGCCAAACAAGGCGCTTCTGATTTACACCTATCGGCGGGTTTGCCTCCGAT
GATTCGTGTTGACGGCGATGTACGACGTATCAATCTGCCACCTATGGAACATAAAGAGGTGCACGCACTGATTTATGACA
TCATGAATGATAAGCAGCGAAAGGACTTTGAAGAGTTTCTTGAGACGGATTTCTCGTTTGAAGTACCAGGCGTTGCTCGA
TTCCGTGTTAACGCATTTAACCAAAATCGCGGTGCCGGTGCTGTATTCCGAACCATCCCATCCAAGGTATTAACCATGGA
AGATCTGGGGATGGGGCAGGTATTTAAAGATGTGGCAGCTGTTCCTCGTGGACTTGTGTTGGTAACGGGCCCAACCGGTT
CGGGTAAATCTACAACTCTGGCGGCTATGATTGATTTCATTAACGACAACCGTTATGACCATATTCTAACCATCGAAGAT
CCGATAGAATTTGTACACGAAAGTAAAAAATGCCTAGTTAACCAACGCGAAGTTCACCGTGACACCCTCGGGTTTAATGA
AGCACTTCGTTCGGCGCTTCGTGAAGATCCCGATATTATCTTGGTGGGTGAGCTTCGAGATCTTGAAACCATTCGTTTGG
CGTTGACCGCTGCTGAAACGGGTCACTTGGTATTTGGTACATTGCACACCACCTCTGCAGCCAAAACCATTGACCGAGTT
GTTGACGTATTCCCTGCGAATGAAAAAGCGATGGTTCGGTCGATGCTGTCAGAGTCACTACAAGCGGTTATCTCACAAAC
CCTGATGAAAAAAGTAGGCGGTGGTCGAGTAGCGGCGCATGAGATTATGATCGGAACCCCCGCGATCAGAAACCTGATTC
GAGAAGACAAAGTGGCGCAGATGTACTCCGCTATTCAAACCGGCGCTCAGTTGGGTATGCAGACGCTTGACCAGTGTTTA
ACCAACTTGCTTCAGAAAGGGCTTATTACGCGAGAAGCGGCCAGAGAAAAAGCTAAAATGCCAGAGAACTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
91.279 |
100 |
0.913 |
| pilT | Pseudomonas stutzeri DSM 10701 |
90.116 |
100 |
0.901 |
| pilT | Acinetobacter nosocomialis M2 |
84.302 |
100 |
0.843 |
| pilT | Acinetobacter baumannii D1279779 |
84.302 |
100 |
0.843 |
| pilT | Acinetobacter baumannii strain A118 |
84.302 |
100 |
0.843 |
| pilT | Acinetobacter baylyi ADP1 |
82.267 |
100 |
0.823 |
| pilT | Legionella pneumophila strain Lp02 |
76.036 |
98.256 |
0.747 |
| pilT | Legionella pneumophila strain ERS1305867 |
76.036 |
98.256 |
0.747 |
| pilT | Neisseria gonorrhoeae MS11 |
67.246 |
100 |
0.674 |
| pilT | Neisseria meningitidis 8013 |
67.246 |
100 |
0.674 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.353 |
98.837 |
0.666 |
| pilT | Vibrio cholerae strain A1552 |
67.353 |
98.837 |
0.666 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.754 |
100 |
0.529 |
| pilU | Pseudomonas stutzeri DSM 10701 |
43.284 |
97.384 |
0.422 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |
| pilU | Vibrio cholerae strain A1552 |
40.118 |
98.547 |
0.395 |