Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PGH47_RS24150 Genome accession   NZ_CP116353
Coordinates   5405346..5406755 (-) Length   469 a.a.
NCBI ID   WP_271665181.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5400346..5411755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH47_RS24125 (PGH47_24125) - 5400381..5400920 (-) 540 WP_030961701.1 SigE family RNA polymerase sigma factor -
  PGH47_RS24130 (PGH47_24130) - 5401234..5402172 (-) 939 WP_271665178.1 A/G-specific adenine glycosylase -
  PGH47_RS24135 (PGH47_24135) - 5402366..5402728 (+) 363 WP_271665179.1 hypothetical protein -
  PGH47_RS24140 (PGH47_24140) - 5403121..5403954 (+) 834 WP_271665180.1 hypothetical protein -
  PGH47_RS24145 (PGH47_24145) disA 5404141..5405265 (-) 1125 WP_030958303.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  PGH47_RS24150 (PGH47_24150) radA/sms 5405346..5406755 (-) 1410 WP_271665181.1 DNA repair protein RadA Machinery gene
  PGH47_RS24155 (PGH47_24155) - 5406971..5408767 (+) 1797 WP_271665182.1 hypothetical protein -
  PGH47_RS24160 (PGH47_24160) - 5408806..5409666 (-) 861 WP_271665183.1 hypothetical protein -
  PGH47_RS24165 (PGH47_24165) - 5409741..5410673 (+) 933 WP_030959342.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49692.79 Da        Isoelectric Point: 7.7380

>NTDB_id=709545 PGH47_RS24150 WP_271665181.1 5405346..5406755(-) (radA/sms) [Streptomyces sp. HUAS 31]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGQIDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIGALDDHLYLTAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPTGMKVLEVADIGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=709545 PGH47_RS24150 WP_271665181.1 5405346..5406755(-) (radA/sms) [Streptomyces sp. HUAS 31]
ATGGCTGCCCGTACCAAGACCACGAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCGCCGGGCC
GGGTCACGTCGTCCGCGCTGCCGATCGGGCAGATCGACGGGCGGCAGGCGACCGCGCGCTCCACCGGCGTGCCGGAGCTG
GACCGCGTCCTCGGCGGCGGGCTGGTGCCCGGGGCCGTCGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTCACCGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGGGCCGACCGCATCGGCGCCCTCGACGACCATCTGTACCTCACGGCCGAGACCGATCTGTCCGCCGTGCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTCGACTCGGTGCAGACGGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCCGGCGCCCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCCATCGCCGGACCCCGCCTCCTGGAGCACCTCGTGGACGTGGTCCTCCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGGCTCGTGCGGGGCGTCAAGAACCGCTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGACTCTTCCTGACCCGTCGCGCCGAACCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGACCCTTGGTGGCCGAGGTTCAGGCGCTCACCGTCGACTCCCAGATC
CCCTCGCCCCGCCGCACGACGTCCGGTCTGGAGACCTCGCGCGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCGGAGCCCGCGGCCGACCTCG
CCGTCGCCCTCGCGCTGGCCTCCGCGGCCAGTGACACACCTCTCCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCTCGT
CCCGGGCGACCCCGGCAAGATCCCGACGGGCATGAAGGTGCTGGAAGTGGCCGACATAGGAGACGCGCTCCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409