Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilT   Type   Machinery gene
Locus tag   NKT77_RS05055 Genome accession   NZ_CP101111
Coordinates   1105984..1107024 (+) Length   346 a.a.
NCBI ID   WP_254731916.1    Uniprot ID   -
Organism   Moraxella sp. FZLJ2107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1100984..1112024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKT77_RS05035 (NKT77_05035) - 1101625..1102257 (+) 633 WP_254731910.1 trimeric intracellular cation channel family protein -
  NKT77_RS05040 (NKT77_05040) - 1102390..1103352 (+) 963 WP_254731912.1 bile acid:sodium symporter family protein -
  NKT77_RS05045 (NKT77_05045) - 1103621..1104865 (-) 1245 WP_254731914.1 NnrS family protein -
  NKT77_RS05050 (NKT77_05050) - 1105150..1105845 (-) 696 WP_254731915.1 YggS family pyridoxal phosphate-dependent enzyme -
  NKT77_RS05055 (NKT77_05055) pilT 1105984..1107024 (+) 1041 WP_254731916.1 type IV pilus twitching motility protein PilT Machinery gene
  NKT77_RS05060 (NKT77_05060) fur 1107091..1107525 (-) 435 WP_253224105.1 ferric iron uptake transcriptional regulator -
  NKT77_RS05065 (NKT77_05065) - 1107787..1108164 (+) 378 WP_254731917.1 outer membrane protein assembly factor BamE -
  NKT77_RS05070 (NKT77_05070) - 1108269..1108613 (-) 345 WP_254731918.1 RnfH family protein -
  NKT77_RS05075 (NKT77_05075) - 1108610..1109692 (-) 1083 WP_254731919.1 hypothetical protein -
  NKT77_RS05080 (NKT77_05080) - 1109817..1110512 (-) 696 WP_253224109.1 cytochrome c -
  NKT77_RS05085 (NKT77_05085) - 1110899..1111201 (-) 303 WP_254731920.1 cytochrome c5 family protein -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 37565.09 Da        Isoelectric Point: 6.5548

>NTDB_id=708685 NKT77_RS05055 WP_254731916.1 1105984..1107024(+) (pilT) [Moraxella sp. FZLJ2107]
MLNLTNLLTFAHAQGASDLHLSTGNVFMRIDGVLTPVALPTPDHQMVSDLLRSVMSDAQYQTWQNELECDFVIEVTGVAR
FRVNAFFQTHGAAAVFRTIASTVPSLHSLFDDEICQILEHISYAKSGLVLVTGSTGSGKSTTLAAMVNAINRTQAAHILT
IEDPIEYLHPSDKSLISQRQVGKDTHSFSHALRSALREDPDVILVGELRDLESIRLALTAAETGHLVLATLHTINAAKSI
DRIIDVFDSHEKNMIRTMLADSLTAIIAQRLLPKTGGGRVAALEILQHTPAVANLIRENKLAQLPSVIQTGQAHGMTSLD
QSLLSLVKQGKISKETANLAAKEMVF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=708685 NKT77_RS05055 WP_254731916.1 1105984..1107024(+) (pilT) [Moraxella sp. FZLJ2107]
ATGCTTAACCTAACCAACTTACTCACTTTCGCCCATGCCCAAGGCGCGTCTGATTTGCACTTATCCACCGGCAATGTCTT
TATGCGTATCGATGGCGTGCTTACGCCTGTTGCCCTGCCTACGCCCGATCATCAGATGGTGAGCGATCTGTTGCGCTCGG
TGATGAGTGATGCGCAGTACCAGACTTGGCAAAATGAGCTTGAATGTGATTTTGTCATCGAAGTGACGGGCGTGGCGCGC
TTTCGTGTCAATGCCTTTTTTCAGACGCATGGTGCAGCGGCGGTATTTCGCACCATTGCAAGTACTGTACCAAGTCTACA
TAGCCTATTTGATGATGAAATTTGTCAGATTCTTGAGCATATCAGCTACGCCAAATCAGGGCTTGTACTGGTCACAGGCA
GCACAGGCTCGGGCAAATCCACCACGCTTGCCGCCATGGTCAATGCCATCAATCGCACACAAGCTGCACACATTCTCACC
ATCGAAGACCCGATTGAATATCTACACCCGAGTGATAAATCTCTCATCAGTCAGCGACAAGTCGGCAAGGATACGCACAG
CTTTAGCCATGCGCTGCGCTCAGCACTGCGTGAAGATCCTGATGTGATTTTGGTCGGTGAACTTCGCGACCTTGAGAGCA
TTCGCCTTGCACTCACCGCTGCTGAGACTGGGCATTTGGTACTGGCGACGCTACACACTATCAATGCCGCCAAGAGCATT
GATCGCATCATCGATGTGTTTGATTCGCATGAGAAAAATATGATTCGCACCATGCTTGCCGACTCGCTTACCGCGATCAT
CGCACAGCGGCTGCTGCCAAAGACAGGTGGTGGACGCGTGGCAGCATTAGAGATTTTGCAGCATACGCCTGCGGTAGCGA
ATTTAATCCGCGAAAATAAGCTTGCGCAGCTGCCATCAGTGATCCAAACAGGGCAAGCACACGGTATGACAAGCCTTGAT
CAGTCGCTATTATCACTGGTCAAACAAGGCAAAATCAGTAAAGAGACGGCGAATTTAGCCGCAAAAGAGATGGTGTTTTG
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

58.892

99.133

0.584

  pilT Acinetobacter baumannii strain A118

58.892

99.133

0.584

  pilT Acinetobacter nosocomialis M2

58.892

99.133

0.584

  pilT Neisseria meningitidis 8013

58.43

99.422

0.581

  pilT Neisseria gonorrhoeae MS11

58.14

99.422

0.578

  pilT Acinetobacter baylyi ADP1

57.31

98.844

0.566

  pilT Pseudomonas stutzeri DSM 10701

56.851

99.133

0.564

  pilT Pseudomonas aeruginosa PAK

56.725

98.844

0.561

  pilT Legionella pneumophila strain Lp02

55.718

98.555

0.549

  pilT Legionella pneumophila strain ERS1305867

55.718

98.555

0.549

  pilT Vibrio cholerae O1 biovar El Tor strain E7946

56.667

95.376

0.54

  pilT Vibrio cholerae strain A1552

56.667

95.376

0.54

  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.97

95.376

0.448

  pilU Pseudomonas stutzeri DSM 10701

39.474

98.844

0.39

  pilU Vibrio cholerae strain A1552

40.798

94.22

0.384

  pilU Acinetobacter baylyi ADP1

37.91

96.821

0.367

  pilB Legionella pneumophila strain ERS1305867

31.807

100

0.361