Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   NMD13_RS04930 Genome accession   NZ_CP101034
Coordinates   1031603..1032013 (+) Length   136 a.a.
NCBI ID   WP_370600746.1    Uniprot ID   -
Organism   Pseudomonas nitroreducens strain OT171     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026603..1037013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD13_RS04905 (NMD13_04890) yacG 1026703..1026906 (-) 204 WP_015475735.1 DNA gyrase inhibitor YacG -
  NMD13_RS04910 (NMD13_04895) coaE 1026903..1027511 (-) 609 WP_370600742.1 dephospho-CoA kinase -
  NMD13_RS04915 (NMD13_04900) pilD 1027577..1028449 (-) 873 WP_370600743.1 A24 family peptidase Machinery gene
  NMD13_RS04920 (NMD13_04905) pilC 1028455..1029672 (-) 1218 WP_370600744.1 type II secretion system F family protein Machinery gene
  NMD13_RS04925 (NMD13_04910) pilB 1029676..1031379 (-) 1704 WP_370600745.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NMD13_RS04930 (NMD13_04915) comP 1031603..1032013 (+) 411 WP_370600746.1 pilin Machinery gene
  NMD13_RS04935 (NMD13_04920) - 1032083..1033867 (+) 1785 WP_370600747.1 tetratricopeptide repeat protein -
  NMD13_RS04945 (NMD13_04930) galE 1034653..1035633 (-) 981 WP_370600748.1 UDP-glucose 4-epimerase GalE -
  NMD13_RS04950 (NMD13_04935) nadC 1035933..1036781 (-) 849 WP_370600749.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14238.50 Da        Isoelectric Point: 8.4889

>NTDB_id=708276 NMD13_RS04930 WP_370600746.1 1031603..1032013(+) (comP) [Pseudomonas nitroreducens strain OT171]
MKAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTIRARVSEGLTLASSAKTAIAETFQNNGAFTLTASGWTAPNGTKNVD
KVEVADTTGVITVTMSTLAQGVILTLTPGLTVGQPVTWTCTTASTTKKYVPAECRN

Nucleotide


Download         Length: 411 bp        

>NTDB_id=708276 NMD13_RS04930 WP_370600746.1 1031603..1032013(+) (comP) [Pseudomonas nitroreducens strain OT171]
ATGAAAGCTCAAAAAGGCTTCACCCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCAATTGCTAT
TCCTGCCTACCAGGACTACACCATTCGCGCCCGTGTGAGCGAGGGGCTGACCCTGGCTTCGTCGGCCAAGACCGCTATCG
CTGAAACCTTCCAGAATAACGGTGCTTTCACTCTGACCGCCTCGGGCTGGACCGCTCCGAACGGCACCAAAAACGTGGAC
AAGGTTGAGGTCGCGGATACTACTGGTGTCATTACCGTCACCATGAGCACCTTGGCTCAAGGCGTTATTCTGACCCTGAC
CCCTGGCCTGACCGTCGGTCAGCCGGTTACCTGGACGTGCACCACTGCTTCGACCACTAAGAAGTATGTGCCGGCTGAGT
GCCGTAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

57.432

100

0.625
  pilA2 Legionella pneumophila str. Paris

58.955

98.529

0.581
  pilA2 Legionella pneumophila strain ERS1305867

58.955

98.529

0.581
  pilA Ralstonia pseudosolanacearum GMI1000

47.826

100

0.566
  pilE Neisseria gonorrhoeae MS11

42.405

100

0.493
  pilE Neisseria gonorrhoeae strain FA1090

42.038

100

0.485
  pilA Acinetobacter baumannii strain A118

43.571

100

0.449
  pilA/pilA1 Eikenella corrodens VA1

37.821

100

0.434
  pilA Pseudomonas aeruginosa PAK

36.646

100

0.434
  pilA Vibrio cholerae strain A1552

38.732

100

0.404
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.732

100

0.404
  pilA Vibrio cholerae C6706

38.732

100

0.404
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.571

100

0.397
  pilA/pilAI Pseudomonas stutzeri DSM 10701

35.811

100

0.39
  pilA Vibrio parahaemolyticus RIMD 2210633

41.935

91.176

0.382