Detailed information NTG0708273

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NMD13_RS04915
• Genome accession: NZ_CP101034
• Coordinates: 1027577..1028449 (-)
• Length: 290 a.a.
• NCBI ID: WP_370600743.1
• Uniprot ID: -
• Organism: Pseudomonas nitroreducens strain OT171
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1022577..1033449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD13_RS04875 (NMD13_04860)	-	1023779..1023949 (-)	171	WP_017516731.1	DUF3094 domain-containing protein	-
NMD13_RS04880 (NMD13_04865)	-	1024032..1024661 (-)	630	WP_370600738.1	DUF1780 domain-containing protein	-
NMD13_RS04885 (NMD13_04870)	-	1024767..1025183 (+)	417	WP_370600739.1	GNAT family N-acetyltransferase	-
NMD13_RS04890 (NMD13_04875)	-	1025186..1025653 (+)	468	WP_370600740.1	FAD/FMN-containing dehydrogenase	-
NMD13_RS04895 (NMD13_04880)	-	1025650..1026339 (+)	690	WP_370600741.1	energy-coupling factor ABC transporter permease	-
NMD13_RS04900 (NMD13_04885)	-	1026447..1026662 (+)	216	WP_331318187.1	hypothetical protein	-
NMD13_RS04905 (NMD13_04890)	yacG	1026703..1026906 (-)	204	WP_015475735.1	DNA gyrase inhibitor YacG	-
NMD13_RS04910 (NMD13_04895)	coaE	1026903..1027511 (-)	609	WP_370600742.1	dephospho-CoA kinase	-
NMD13_RS04915 (NMD13_04900)	pilD	1027577..1028449 (-)	873	WP_370600743.1	A24 family peptidase	Machinery gene
NMD13_RS04920 (NMD13_04905)	pilC	1028455..1029672 (-)	1218	WP_370600744.1	type II secretion system F family protein	Machinery gene
NMD13_RS04925 (NMD13_04910)	pilB	1029676..1031379 (-)	1704	WP_370600745.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NMD13_RS04930 (NMD13_04915)	comP	1031603..1032013 (+)	411	WP_370600746.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31931.92 Da
• Isoelectric Point: 7.0077

>NTDB_id=708273 NMD13_RS04915 WP_370600743.1 1027577..1028449(-) (pilD) [Pseudomonas nitroreducens strain OT171]
MPVLNFLASTPLAFVLCALVLGLLIGSFLNVVIHRLPRMMERDWQREARLALDLPEGEPQPTYNLILPNSQCPHCGHEIK
AWENIPVVSYLALGGKCSSCKSPISKRYPLIELACGALSAFIAWHYGFGWQAGAMLLLGWGLLAMSMIDVDHQLLPDALV
LPLLWLGLIVNYFGLFTNLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIITLRLRKAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFH

Nucleotide

• Length: 873 bp

>NTDB_id=708273 NMD13_RS04915 WP_370600743.1 1027577..1028449(-) (pilD) [Pseudomonas nitroreducens strain OT171]
ATGCCAGTCCTCAACTTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTATGCGCGCTCGTCCTCGGGCTTCTGATCGGCAG
CTTCCTCAACGTGGTCATCCATCGCCTGCCGCGAATGATGGAACGTGACTGGCAGCGTGAAGCCCGCCTGGCGCTGGACC
TGCCGGAAGGCGAGCCGCAGCCCACCTACAACCTGATTCTCCCGAACTCCCAGTGCCCGCACTGCGGCCACGAGATCAAG
GCCTGGGAAAACATCCCCGTGGTGAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGTCACCGATCAGCAAGCG
CTACCCGCTGATCGAGCTGGCCTGTGGCGCGCTCTCGGCCTTCATCGCCTGGCACTACGGCTTCGGCTGGCAGGCCGGCG
CCATGCTGCTGCTCGGCTGGGGGCTGCTGGCGATGAGCATGATCGACGTCGATCACCAGTTGCTGCCAGATGCGCTGGTA
CTGCCATTGCTGTGGTTGGGCCTGATCGTCAATTACTTCGGACTGTTCACCAATCTGGGCGACGCACTCTGGGGTGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGTTACGGCGACT
TCAAACTGCTGGCCATGCTCGGCGCCTGGGGTGGTTGGCAGGTGCTGCCGCTGACCATCCTCTTGTCGTCCCTGGTGGGA
GCGGTGCTGGGCATCATCACCCTGCGCCTGCGCAAGGCAGAAACCAGTACGCCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCACTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.396	95.862	0.531
pilD	Vibrio campbellii strain DS40M4	53.957	95.862	0.517
pilD	Acinetobacter baumannii D1279779	51.957	96.897	0.503
pilD	Acinetobacter nosocomialis M2	51.957	96.897	0.503
pilD	Neisseria gonorrhoeae MS11	50.923	93.448	0.476