Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PIB66_RS17445 Genome accession   NZ_CP116136
Coordinates   3659980..3660585 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-P649     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3654980..3665585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB66_RS17425 (PIB66_17425) aes 3655121..3656080 (+) 960 WP_000764314.1 acetyl esterase -
  PIB66_RS17430 (PIB66_17430) hemH 3656077..3657039 (-) 963 WP_001250117.1 ferrochelatase -
  PIB66_RS17435 (PIB66_17435) adk 3657171..3657815 (-) 645 WP_001220233.1 adenylate kinase -
  PIB66_RS17440 (PIB66_17440) htpG 3657996..3659870 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PIB66_RS17445 (PIB66_17445) recR 3659980..3660585 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PIB66_RS17450 (PIB66_17450) ybaB 3660585..3660914 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PIB66_RS17455 (PIB66_17455) dnaX 3660967..3662898 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PIB66_RS17460 (PIB66_17460) apt 3663027..3663578 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PIB66_RS17465 (PIB66_17465) ybaN 3663731..3664108 (-) 378 WP_001188905.1 DUF454 family protein -
  PIB66_RS17470 (PIB66_17470) priC 3664178..3664705 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  PIB66_RS17475 (PIB66_17475) rsmS 3664719..3664883 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=708273 PIB66_RS17445 WP_001195025.1 3659980..3660585(-) (recR) [Escherichia coli strain DETEC-P649]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=708273 PIB66_RS17445 WP_001195025.1 3659980..3660585(-) (recR) [Escherichia coli strain DETEC-P649]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443