Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | NKJ47_RS07635 | Genome accession | NZ_CP100647 |
| Coordinates | 1900923..1901960 (+) | Length | 345 a.a. |
| NCBI ID | WP_254460883.1 | Uniprot ID | - |
| Organism | Xanthomonas sacchari strain DD13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1895923..1906960
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NKJ47_RS07605 | soxR | 1896000..1896437 (+) | 438 | WP_254460879.1 | redox-sensitive transcriptional activator SoxR | - |
| NKJ47_RS07610 | - | 1897184..1897636 (-) | 453 | WP_254460880.1 | DUF4426 domain-containing protein | - |
| NKJ47_RS07620 | proC | 1897795..1898640 (-) | 846 | WP_254460881.1 | pyrroline-5-carboxylate reductase | - |
| NKJ47_RS07625 | - | 1898772..1899800 (-) | 1029 | WP_307552895.1 | hypothetical protein | - |
| NKJ47_RS07630 | - | 1900150..1900800 (-) | 651 | WP_254461369.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| NKJ47_RS07635 | pilT | 1900923..1901960 (+) | 1038 | WP_254460883.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| NKJ47_RS07640 | pilU | 1902088..1903218 (+) | 1131 | WP_043095749.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| NKJ47_RS07645 | - | 1903374..1904669 (+) | 1296 | WP_254460884.1 | WD40 repeat domain-containing protein | - |
| NKJ47_RS07650 | - | 1904666..1906162 (+) | 1497 | WP_254460885.1 | diguanylate cyclase | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38627.30 Da Isoelectric Point: 6.6652
>NTDB_id=705951 NKJ47_RS07635 WP_254460883.1 1900923..1901960(+) (pilT) [Xanthomonas sacchari strain DD13]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRLFE
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQHL
QDLVKRSLITRNQAREYAKDKRLFE
Nucleotide
Download Length: 1038 bp
>NTDB_id=705951 NKJ47_RS07635 WP_254460883.1 1900923..1901960(+) (pilT) [Xanthomonas sacchari strain DD13]
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAGGCGTCCGACCTGCATCTGTCCGCGGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTCCGCCGCATCAACATCCCGGCGCTGGACCACAAGCAGGTGCATGCGCTTGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATTCCCAGCCTGGCGCGC
TTCCGCGTCAACGCGTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGCACCATTCCCTCGGAAGTGCTGACCCTGGA
GGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGATCAGCCGCAGGGCCTGATCCTGGTCACCGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCACGGCTTCAACGA
GGCGCTGCGTTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAGACGATCCGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAGAAGCCGATGGTGCGTTCGATGCTGTCCGAGTCGCTGCGCGCGGTGATCTCGCAGGC
ATTGCTGAAGAAGGTCGGTGGCGGCCGCACCGCGGCCTGGGAGATCATGGTCGGCACCCCTGCGATCCGCAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGTACGGCATGCAGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAGTACGCTAAGGACAAGCGGTTGTTCGAGTGA
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAGGCGTCCGACCTGCATCTGTCCGCGGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTCCGCCGCATCAACATCCCGGCGCTGGACCACAAGCAGGTGCATGCGCTTGTCTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAGGAATTCCTCGAGGTCGACTTCTCCTTCGAGATTCCCAGCCTGGCGCGC
TTCCGCGTCAACGCGTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGCACCATTCCCTCGGAAGTGCTGACCCTGGA
GGACCTGGGCTGCCCGCCGATCTTCCGCCAGCTGATCGATCAGCCGCAGGGCCTGATCCTGGTCACCGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTGGCCGGCATGATCGACTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCACGGCTTCAACGA
GGCGCTGCGTTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAGACGATCCGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAGAAGCCGATGGTGCGTTCGATGCTGTCCGAGTCGCTGCGCGCGGTGATCTCGCAGGC
ATTGCTGAAGAAGGTCGGTGGCGGCCGCACCGCGGCCTGGGAGATCATGGTCGGCACCCCTGCGATCCGCAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGTACGGCATGCAGACCCTGGACCAGCACCTG
CAGGACCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCCCGCGAGTACGCTAAGGACAAGCGGTTGTTCGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
80.233 |
99.71 |
0.8 |
| pilT | Acinetobacter baumannii D1279779 |
80.233 |
99.71 |
0.8 |
| pilT | Acinetobacter baumannii strain A118 |
80.233 |
99.71 |
0.8 |
| pilT | Pseudomonas stutzeri DSM 10701 |
79.07 |
99.71 |
0.788 |
| pilT | Acinetobacter baylyi ADP1 |
78.488 |
99.71 |
0.783 |
| pilT | Pseudomonas aeruginosa PAK |
79.351 |
98.261 |
0.78 |
| pilT | Legionella pneumophila strain Lp02 |
75.291 |
99.71 |
0.751 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.291 |
99.71 |
0.751 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
71.125 |
95.362 |
0.678 |
| pilT | Vibrio cholerae strain A1552 |
71.125 |
95.362 |
0.678 |
| pilT | Neisseria meningitidis 8013 |
65.982 |
98.841 |
0.652 |
| pilT | Neisseria gonorrhoeae MS11 |
65.689 |
98.841 |
0.649 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.855 |
100 |
0.499 |
| pilU | Vibrio cholerae strain A1552 |
40.23 |
100 |
0.406 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.708 |
98.261 |
0.4 |
| pilU | Acinetobacter baylyi ADP1 |
40.294 |
98.551 |
0.397 |