Detailed information NTG0705952

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: NKJ47_RS07640
• Genome accession: NZ_CP100647
• Coordinates: 1902088..1903218 (+)
• Length: 376 a.a.
• NCBI ID: WP_043095749.1
• Uniprot ID: -
• Organism: Xanthomonas sacchari strain DD13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1897088..1908218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NKJ47_RS07610	-	1897184..1897636 (-)	453	WP_254460880.1	DUF4426 domain-containing protein	-
NKJ47_RS07620	proC	1897795..1898640 (-)	846	WP_254460881.1	pyrroline-5-carboxylate reductase	-
NKJ47_RS07625	-	1898772..1899800 (-)	1029	WP_307552895.1	hypothetical protein	-
NKJ47_RS07630	-	1900150..1900800 (-)	651	WP_254461369.1	YggS family pyridoxal phosphate-dependent enzyme	-
NKJ47_RS07635	pilT	1900923..1901960 (+)	1038	WP_254460883.1	type IV pilus twitching motility protein PilT	Machinery gene
NKJ47_RS07640	pilU	1902088..1903218 (+)	1131	WP_043095749.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
NKJ47_RS07645	-	1903374..1904669 (+)	1296	WP_254460884.1	WD40 repeat domain-containing protein	-
NKJ47_RS07650	-	1904666..1906162 (+)	1497	WP_254460885.1	diguanylate cyclase	-
NKJ47_RS07655	-	1906275..1906991 (+)	717	WP_254460886.1	YitT family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41940.22 Da
• Isoelectric Point: 6.8811

>NTDB_id=705952 NKJ47_RS07640 WP_043095749.1 1902088..1903218(+) (pilU) [Xanthomonas sacchari strain DD13]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAMKVHGKITPITQTPLTPQQSRDLVLNVMTPAQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPSVDELNLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAISFAETGHLVLCTLHANNANQAM
DRVINFFPEDRRSQLLMDLSLNLRGVVAQQLIPTPDGKGRRVAMEIMLGTPLVQDYIREGEIHKLKDVMKESTNLGMKTF
DQSLFELYQAGEISYEDALRHADSQNEVRLRIKLAQGGDARTLAQGLDGVEIAEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=705952 NKJ47_RS07640 WP_043095749.1 1902088..1903218(+) (pilU) [Xanthomonas sacchari strain DD13]
ATGAGCACCATCGACTTCACCTCCTTCCTGAAACTGATGGCGCACCAGAAGGCTTCGGACCTGTTCATCACCTCGGGCAT
GCCGCCGGCGATGAAGGTGCATGGCAAGATCACCCCGATCACGCAGACGCCGCTGACCCCGCAGCAGAGCCGCGACCTGG
TGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCAATTTCGCCATCGGCGTGTCCGGG
GTCGGGCGCTTCCGCGTCAGTTGCTTCTACCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATCGAGACGCGCATTCC
CAGCGTGGACGAGCTGAACCTGCCGCCGGTGATCAAGACCCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAACTCCACCGGCCACATCATCACC
ATCGAGGACCCGATCGAGTTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGAGAACGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAAGGCA
TGGACCACGCCATCTCCTTCGCCGAGACCGGCCACCTGGTGCTGTGTACCCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCGTCATCAACTTCTTCCCCGAAGACCGCCGCAGCCAGTTGCTGATGGACCTGTCGCTGAACCTGCGCGGGGTGGT
CGCGCAGCAGCTGATCCCGACCCCGGACGGCAAGGGCCGCCGCGTGGCCATGGAGATCATGCTCGGCACCCCGCTGGTGC
AGGACTACATCCGCGAGGGCGAGATCCACAAGCTCAAGGACGTGATGAAGGAGTCCACCAACCTGGGCATGAAGACCTTC
GATCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGAGGATGCGCTGCGCCACGCCGATTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCGCGCACCCTGGCGCAGGGCCTGGACGGGGTCGAGATCGCCG
AAGTGCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (118-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.757	97.606	0.652
pilU	Acinetobacter baylyi ADP1	63.585	94.947	0.604
pilU	Vibrio cholerae strain A1552	53.09	94.681	0.503
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42	93.085	0.391
pilT	Pseudomonas aeruginosa PAK	40.708	90.16	0.367
pilT	Acinetobacter nosocomialis M2	40.116	91.489	0.367
pilT	Acinetobacter baumannii D1279779	40.116	91.489	0.367
pilT	Acinetobacter baumannii strain A118	40.116	91.489	0.367