Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | EP181_RS08965 | Genome accession | NZ_AP018722 |
| Coordinates | 1955173..1956210 (+) | Length | 345 a.a. |
| NCBI ID | WP_127471335.1 | Uniprot ID | - |
| Organism | Thiomicrorhabdus aquaedulcis strain HaS4 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1950173..1961210
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP181_RS08945 | lptG | 1950685..1951854 (-) | 1170 | WP_127471332.1 | LPS export ABC transporter permease LptG | - |
| EP181_RS08950 | lptF | 1951851..1952887 (-) | 1037 | Protein_1814 | LPS export ABC transporter permease LptF | - |
| EP181_RS08955 | - | 1953114..1954613 (+) | 1500 | WP_127471333.1 | leucyl aminopeptidase | - |
| EP181_RS08960 | - | 1954623..1955126 (+) | 504 | WP_127471334.1 | DNA polymerase III subunit chi | - |
| EP181_RS08965 | pilT | 1955173..1956210 (+) | 1038 | WP_127471335.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| EP181_RS08970 | pilU | 1956231..1957388 (+) | 1158 | WP_127471336.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| EP181_RS08975 | - | 1957480..1957920 (-) | 441 | WP_127471337.1 | type II toxin-antitoxin system VapC family toxin | - |
| EP181_RS08980 | - | 1957914..1958228 (-) | 315 | WP_127471338.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| EP181_RS08985 | uvrB | 1958355..1960397 (-) | 2043 | WP_127471339.1 | excinuclease ABC subunit UvrB | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38251.94 Da Isoelectric Point: 5.6921
>NTDB_id=70496 EP181_RS08965 WP_127471335.1 1955173..1956210(+) (pilT) [Thiomicrorhabdus aquaedulcis strain HaS4]
MDITQLLEFSFQQGASDLHLSTGQPPILRIDGDIQRIEAPNFEAEELSTMIYDIMNDEQRRGLEASLEADFSFELPNIAR
FRANVFFQNRGIAAVFRTIPSTILTLEELKAPSIFKEIASFPRGLVLVTGPTGSGKSTTLAAMVDYVNKKDAAHILTVED
PIEFVHQPMRALINQREVHRDTQSFSNALRSALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPADEKEMVRAMLSESLRAVISQALLKKVGGGRIAAHEIMLTTTAIRNLIREGKVPQMQSVLQTSTQLGMQTLDQNL
KELLTKGLITRENARAKAVNKDAFI
MDITQLLEFSFQQGASDLHLSTGQPPILRIDGDIQRIEAPNFEAEELSTMIYDIMNDEQRRGLEASLEADFSFELPNIAR
FRANVFFQNRGIAAVFRTIPSTILTLEELKAPSIFKEIASFPRGLVLVTGPTGSGKSTTLAAMVDYVNKKDAAHILTVED
PIEFVHQPMRALINQREVHRDTQSFSNALRSALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPADEKEMVRAMLSESLRAVISQALLKKVGGGRIAAHEIMLTTTAIRNLIREGKVPQMQSVLQTSTQLGMQTLDQNL
KELLTKGLITRENARAKAVNKDAFI
Nucleotide
Download Length: 1038 bp
>NTDB_id=70496 EP181_RS08965 WP_127471335.1 1955173..1956210(+) (pilT) [Thiomicrorhabdus aquaedulcis strain HaS4]
ATGGACATCACTCAGCTTTTAGAATTTAGTTTTCAGCAAGGCGCCTCCGACTTGCATCTGTCAACCGGTCAGCCGCCTAT
TTTAAGAATCGACGGCGACATTCAACGCATTGAAGCACCTAATTTTGAAGCCGAAGAGTTGTCCACCATGATTTATGACA
TCATGAACGACGAGCAACGACGCGGTCTAGAAGCCAGTTTAGAAGCCGATTTTTCATTTGAACTGCCCAACATTGCGCGA
TTTAGAGCCAACGTGTTTTTTCAAAATCGCGGCATTGCTGCGGTGTTTAGAACCATTCCCAGCACCATTTTGACCTTAGA
AGAGTTAAAAGCCCCCAGCATCTTTAAAGAAATTGCCAGTTTTCCGCGCGGTTTGGTGCTGGTCACTGGGCCGACGGGCT
CGGGAAAATCCACCACATTGGCCGCCATGGTCGATTACGTCAACAAAAAAGACGCCGCGCACATTTTAACCGTGGAAGAC
CCCATTGAATTTGTCCACCAACCGATGCGCGCGCTCATTAACCAACGTGAAGTACACCGCGACACCCAAAGTTTTAGCAA
CGCCCTACGTTCGGCACTGCGTGAAGACCCAGACGTCATTTTGGTAGGCGAAATGCGTGACTTAGAAACCATTCGCCTGG
CGCTCACCGCCGCCGAAACGGGTCATTTGGTGTTTGGCACCTTGCATACCAGCTCGGCGGCCAAAACCATAGACCGCATT
ATTGACGTGTTTCCAGCCGACGAAAAAGAGATGGTGCGCGCCATGCTGTCCGAATCGTTGCGCGCGGTAATTTCACAAGC
CCTGCTTAAAAAAGTAGGCGGTGGGCGCATTGCCGCGCACGAAATCATGCTGACCACCACCGCCATTCGCAATTTAATTC
GCGAAGGCAAAGTGCCACAAATGCAGTCGGTACTGCAAACGTCCACCCAACTGGGCATGCAAACCCTCGACCAAAACCTA
AAAGAACTGCTCACCAAAGGGCTGATTACCCGTGAAAACGCGCGCGCTAAAGCTGTGAACAAAGACGCGTTTATCTAG
ATGGACATCACTCAGCTTTTAGAATTTAGTTTTCAGCAAGGCGCCTCCGACTTGCATCTGTCAACCGGTCAGCCGCCTAT
TTTAAGAATCGACGGCGACATTCAACGCATTGAAGCACCTAATTTTGAAGCCGAAGAGTTGTCCACCATGATTTATGACA
TCATGAACGACGAGCAACGACGCGGTCTAGAAGCCAGTTTAGAAGCCGATTTTTCATTTGAACTGCCCAACATTGCGCGA
TTTAGAGCCAACGTGTTTTTTCAAAATCGCGGCATTGCTGCGGTGTTTAGAACCATTCCCAGCACCATTTTGACCTTAGA
AGAGTTAAAAGCCCCCAGCATCTTTAAAGAAATTGCCAGTTTTCCGCGCGGTTTGGTGCTGGTCACTGGGCCGACGGGCT
CGGGAAAATCCACCACATTGGCCGCCATGGTCGATTACGTCAACAAAAAAGACGCCGCGCACATTTTAACCGTGGAAGAC
CCCATTGAATTTGTCCACCAACCGATGCGCGCGCTCATTAACCAACGTGAAGTACACCGCGACACCCAAAGTTTTAGCAA
CGCCCTACGTTCGGCACTGCGTGAAGACCCAGACGTCATTTTGGTAGGCGAAATGCGTGACTTAGAAACCATTCGCCTGG
CGCTCACCGCCGCCGAAACGGGTCATTTGGTGTTTGGCACCTTGCATACCAGCTCGGCGGCCAAAACCATAGACCGCATT
ATTGACGTGTTTCCAGCCGACGAAAAAGAGATGGTGCGCGCCATGCTGTCCGAATCGTTGCGCGCGGTAATTTCACAAGC
CCTGCTTAAAAAAGTAGGCGGTGGGCGCATTGCCGCGCACGAAATCATGCTGACCACCACCGCCATTCGCAATTTAATTC
GCGAAGGCAAAGTGCCACAAATGCAGTCGGTACTGCAAACGTCCACCCAACTGGGCATGCAAACCCTCGACCAAAACCTA
AAAGAACTGCTCACCAAAGGGCTGATTACCCGTGAAAACGCGCGCGCTAAAGCTGTGAACAAAGACGCGTTTATCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baylyi ADP1 |
71.512 |
99.71 |
0.713 |
| pilT | Pseudomonas aeruginosa PAK |
71.006 |
97.971 |
0.696 |
| pilT | Pseudomonas stutzeri DSM 10701 |
69.767 |
99.71 |
0.696 |
| pilT | Acinetobacter baumannii strain A118 |
68.986 |
100 |
0.69 |
| pilT | Acinetobacter nosocomialis M2 |
68.986 |
100 |
0.69 |
| pilT | Acinetobacter baumannii D1279779 |
68.986 |
100 |
0.69 |
| pilT | Neisseria meningitidis 8013 |
66.377 |
100 |
0.664 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.656 |
97.681 |
0.661 |
| pilT | Vibrio cholerae strain A1552 |
67.656 |
97.681 |
0.661 |
| pilT | Neisseria gonorrhoeae MS11 |
66.087 |
100 |
0.661 |
| pilT | Legionella pneumophila strain Lp02 |
66.279 |
99.71 |
0.661 |
| pilT | Legionella pneumophila strain ERS1305867 |
66.279 |
99.71 |
0.661 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.575 |
100 |
0.51 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.09 |
97.101 |
0.409 |
| pilU | Vibrio cholerae strain A1552 |
40.597 |
97.101 |
0.394 |
| pilU | Acinetobacter baylyi ADP1 |
38.824 |
98.551 |
0.383 |