Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | NHL60_RS01095 | Genome accession | NZ_CP099975 |
| Coordinates | 220930..221967 (+) | Length | 345 a.a. |
| NCBI ID | WP_253447869.1 | Uniprot ID | - |
| Organism | Halomonas sp. Y3 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 215930..226967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHL60_RS01065 | - | 216320..216775 (-) | 456 | WP_253447853.1 | DUF4426 domain-containing protein | - |
| NHL60_RS01070 | metW | 216803..217399 (-) | 597 | WP_253451933.1 | methionine biosynthesis protein MetW | - |
| NHL60_RS01075 | - | 217399..218556 (-) | 1158 | WP_253447856.1 | homoserine O-acetyltransferase | - |
| NHL60_RS01080 | - | 218609..219190 (-) | 582 | WP_253447859.1 | YggT family protein | - |
| NHL60_RS01085 | proC | 219249..220073 (-) | 825 | WP_253447862.1 | pyrroline-5-carboxylate reductase | - |
| NHL60_RS01090 | - | 220144..220863 (-) | 720 | WP_253447865.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| NHL60_RS01095 | pilT | 220930..221967 (+) | 1038 | WP_253447869.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| NHL60_RS01100 | pilU | 221994..223136 (+) | 1143 | WP_253447873.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| NHL60_RS01105 | - | 223156..224295 (-) | 1140 | WP_253447875.1 | anhydro-N-acetylmuramic acid kinase | - |
| NHL60_RS01110 | tyrS | 224411..225610 (+) | 1200 | WP_253447878.1 | tyrosine--tRNA ligase | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38133.78 Da Isoelectric Point: 6.7787
>NTDB_id=703079 NHL60_RS01095 WP_253447869.1 220930..221967(+) (pilT) [Halomonas sp. Y3]
MDITELLAFSAKQKASDLHLSAGLPPMIRVDGDIRRLNVPAMEDREVRKLIYDIMADRQRRDYEEFFETDFSFEVPGVSR
FRVNVFNHARGAGAVFRTIPSEVLTLEDLGLGQVFRQLSMLPRGLVLVTGPTGSGKSTTLAAMIDYINSNRYEHILTIED
PVEFVHRSKRCLINQREVHRDTHGFAQALRSALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPGEEKSMVRSMLSESLQAVVSQSLLKRIGGGRVAAHEILIATAAVRNLVREDKVAQIYSAIQTGGSLGMQTLDASL
AKLVADNLVTREEAQSKAKGVLQAL
MDITELLAFSAKQKASDLHLSAGLPPMIRVDGDIRRLNVPAMEDREVRKLIYDIMADRQRRDYEEFFETDFSFEVPGVSR
FRVNVFNHARGAGAVFRTIPSEVLTLEDLGLGQVFRQLSMLPRGLVLVTGPTGSGKSTTLAAMIDYINSNRYEHILTIED
PVEFVHRSKRCLINQREVHRDTHGFAQALRSALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPGEEKSMVRSMLSESLQAVVSQSLLKRIGGGRVAAHEILIATAAVRNLVREDKVAQIYSAIQTGGSLGMQTLDASL
AKLVADNLVTREEAQSKAKGVLQAL
Nucleotide
Download Length: 1038 bp
>NTDB_id=703079 NHL60_RS01095 WP_253447869.1 220930..221967(+) (pilT) [Halomonas sp. Y3]
ATGGATATTACCGAACTGCTGGCATTTTCGGCAAAGCAGAAGGCCTCGGACCTGCACCTGTCGGCGGGGCTGCCGCCGAT
GATACGCGTCGACGGCGACATACGCCGCCTGAACGTGCCGGCCATGGAGGACCGTGAGGTCCGCAAGCTGATCTACGACA
TCATGGCCGACCGCCAGCGCCGTGACTACGAGGAGTTCTTCGAGACCGACTTCTCCTTCGAGGTGCCGGGGGTGTCGCGC
TTCCGTGTCAACGTCTTCAACCACGCCCGTGGCGCGGGGGCGGTGTTCCGGACCATTCCCTCCGAGGTCCTGACCCTGGA
AGATCTGGGGCTCGGGCAGGTGTTCCGCCAGCTCTCCATGCTGCCCCGGGGCCTGGTACTGGTGACCGGCCCCACCGGCT
CGGGCAAGAGTACTACCCTGGCGGCGATGATCGACTACATCAACAGCAATCGCTACGAGCACATCCTGACTATCGAGGAT
CCGGTAGAATTCGTCCACCGCAGCAAGCGCTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCACGGTTTTGCTCA
GGCCCTGCGCAGCGCCCTGCGCGAGGACCCGGACGTGATCCTGGTGGGTGAGATGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCAGCGGAGACCGGCCATCTGGTGTTCGGTACCCTGCACACCACCTCGGCGGCCAAGACCATCGACCGGATC
ATCGATGTCTTTCCGGGGGAGGAGAAGTCCATGGTGCGCTCCATGCTCTCCGAGTCGCTGCAGGCAGTGGTCTCGCAGTC
CCTGCTCAAGCGCATCGGCGGCGGGCGAGTGGCTGCCCACGAGATACTGATCGCCACGGCGGCGGTACGCAACCTGGTTC
GCGAGGACAAGGTGGCACAGATCTATTCGGCCATCCAGACCGGAGGGAGTCTCGGGATGCAGACTCTGGACGCTTCACTT
GCCAAGTTGGTCGCCGATAATCTGGTGACCCGTGAGGAAGCTCAATCCAAGGCCAAGGGTGTTCTGCAGGCGCTCTGA
ATGGATATTACCGAACTGCTGGCATTTTCGGCAAAGCAGAAGGCCTCGGACCTGCACCTGTCGGCGGGGCTGCCGCCGAT
GATACGCGTCGACGGCGACATACGCCGCCTGAACGTGCCGGCCATGGAGGACCGTGAGGTCCGCAAGCTGATCTACGACA
TCATGGCCGACCGCCAGCGCCGTGACTACGAGGAGTTCTTCGAGACCGACTTCTCCTTCGAGGTGCCGGGGGTGTCGCGC
TTCCGTGTCAACGTCTTCAACCACGCCCGTGGCGCGGGGGCGGTGTTCCGGACCATTCCCTCCGAGGTCCTGACCCTGGA
AGATCTGGGGCTCGGGCAGGTGTTCCGCCAGCTCTCCATGCTGCCCCGGGGCCTGGTACTGGTGACCGGCCCCACCGGCT
CGGGCAAGAGTACTACCCTGGCGGCGATGATCGACTACATCAACAGCAATCGCTACGAGCACATCCTGACTATCGAGGAT
CCGGTAGAATTCGTCCACCGCAGCAAGCGCTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCACGGTTTTGCTCA
GGCCCTGCGCAGCGCCCTGCGCGAGGACCCGGACGTGATCCTGGTGGGTGAGATGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCAGCGGAGACCGGCCATCTGGTGTTCGGTACCCTGCACACCACCTCGGCGGCCAAGACCATCGACCGGATC
ATCGATGTCTTTCCGGGGGAGGAGAAGTCCATGGTGCGCTCCATGCTCTCCGAGTCGCTGCAGGCAGTGGTCTCGCAGTC
CCTGCTCAAGCGCATCGGCGGCGGGCGAGTGGCTGCCCACGAGATACTGATCGCCACGGCGGCGGTACGCAACCTGGTTC
GCGAGGACAAGGTGGCACAGATCTATTCGGCCATCCAGACCGGAGGGAGTCTCGGGATGCAGACTCTGGACGCTTCACTT
GCCAAGTTGGTCGCCGATAATCTGGTGACCCGTGAGGAAGCTCAATCCAAGGCCAAGGGTGTTCTGCAGGCGCTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
79.351 |
98.261 |
0.78 |
| pilT | Pseudomonas aeruginosa PAK |
79.351 |
98.261 |
0.78 |
| pilT | Acinetobacter baumannii D1279779 |
76.991 |
98.261 |
0.757 |
| pilT | Acinetobacter baumannii strain A118 |
76.991 |
98.261 |
0.757 |
| pilT | Acinetobacter nosocomialis M2 |
76.696 |
98.261 |
0.754 |
| pilT | Acinetobacter baylyi ADP1 |
76.401 |
98.261 |
0.751 |
| pilT | Legionella pneumophila strain Lp02 |
72.485 |
97.971 |
0.71 |
| pilT | Legionella pneumophila strain ERS1305867 |
72.485 |
97.971 |
0.71 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
66.957 |
100 |
0.67 |
| pilT | Vibrio cholerae strain A1552 |
66.957 |
100 |
0.67 |
| pilT | Neisseria meningitidis 8013 |
66.569 |
98.841 |
0.658 |
| pilT | Neisseria gonorrhoeae MS11 |
66.276 |
98.841 |
0.655 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.392 |
98.261 |
0.525 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.493 |
97.101 |
0.403 |
| pilU | Acinetobacter baylyi ADP1 |
38.824 |
98.551 |
0.383 |
| pilU | Vibrio cholerae strain A1552 |
39.403 |
97.101 |
0.383 |