Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   UNDYM_RS04465 Genome accession   NZ_AP018441
Coordinates   973227..974270 (-) Length   347 a.a.
NCBI ID   WP_162039953.1    Uniprot ID   A0A809QGS8
Organism   Undibacterium sp. YM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 968227..979270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDYM_RS04445 (UNDYM_0899) glcE 969217..970281 (+) 1065 WP_162039949.1 glycolate oxidase subunit GlcE -
  UNDYM_RS04450 (UNDYM_0900) glcF 970285..971535 (+) 1251 WP_162039950.1 glycolate oxidase subunit GlcF -
  UNDYM_RS04455 (UNDYM_0901) - 971592..972074 (-) 483 WP_162039951.1 glutathione peroxidase -
  UNDYM_RS04460 (UNDYM_0902) pilU 972071..973207 (-) 1137 WP_162039952.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  UNDYM_RS04465 (UNDYM_0903) pilT 973227..974270 (-) 1044 WP_162039953.1 type IV pilus twitching motility protein PilT Machinery gene
  UNDYM_RS04470 (UNDYM_0904) - 974405..975109 (+) 705 WP_162039954.1 YggS family pyridoxal phosphate-dependent enzyme -
  UNDYM_RS04475 (UNDYM_0905) proC 975099..975923 (+) 825 WP_162039955.1 pyrroline-5-carboxylate reductase -
  UNDYM_RS04480 (UNDYM_0906) - 975943..976278 (-) 336 WP_162039956.1 YqjK family protein -
  UNDYM_RS04485 (UNDYM_0907) - 976282..976671 (-) 390 WP_162039957.1 phage holin family protein -
  UNDYM_RS04490 (UNDYM_0908) - 976687..976998 (-) 312 WP_162039958.1 YqjD family protein -
  UNDYM_RS04495 (UNDYM_0909) ubiA 977129..977995 (-) 867 WP_174244923.1 4-hydroxybenzoate octaprenyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38081.59 Da        Isoelectric Point: 6.5769

>NTDB_id=69630 UNDYM_RS04465 WP_162039953.1 973227..974270(-) (pilT) [Undibacterium sp. YM2]
MDISELLAFSVKNNASDLHLSSGLPPMIRVHGDVRRINLPPLEHKDVHELIYDIMNDSQRKAYEDTLECDFSFSIPGLAR
FRVNAFNQERGAAAVMRTIPSKILSLEQLNAPKIFAELSLKPRGLVLVTGPTGSGKSTTLAGMVNHLNENEYGHILTVED
PIEFVHESKKCLINQREVGPHTMSFNNALRSALREDPDAILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
VDVFPAEEKEMVRSMLSESLQAVISQTLLKTKDGSGRVAAHEIMLGTPAIRNLIREAKIAQMYSSIQTGSNLGMQTLDQN
LTDLVRRNVISVATARGAAKTPDNFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=69630 UNDYM_RS04465 WP_162039953.1 973227..974270(-) (pilT) [Undibacterium sp. YM2]
ATGGACATTTCAGAACTGCTGGCGTTCTCCGTCAAGAACAATGCCTCCGACTTACACTTATCCTCCGGCTTGCCGCCCAT
GATACGGGTACATGGCGACGTCAGGCGCATTAATTTGCCCCCTCTGGAGCATAAAGATGTCCATGAGTTGATCTATGACA
TCATGAATGACTCGCAGCGCAAAGCCTATGAAGACACGCTGGAGTGCGACTTCTCGTTCTCCATCCCTGGTCTGGCACGT
TTCCGCGTGAATGCGTTTAACCAGGAACGTGGCGCCGCAGCTGTCATGCGTACCATTCCGTCCAAGATTTTGTCGCTGGA
ACAGTTGAATGCGCCCAAAATCTTTGCTGAGTTGTCACTAAAACCGCGTGGCCTGGTCCTGGTGACCGGCCCTACCGGTT
CGGGCAAATCCACAACACTGGCAGGCATGGTGAATCACCTCAATGAAAATGAGTATGGCCACATCCTGACGGTTGAAGAC
CCGATAGAATTTGTCCATGAATCCAAGAAATGCCTGATCAACCAGCGTGAAGTCGGCCCGCATACGATGTCTTTCAACAA
CGCGCTGCGCTCTGCCCTGCGTGAAGATCCTGATGCCATCCTGGTCGGTGAGTTGCGTGATCTGGAAACCATACGTCTGG
CACTGACTGCTGCTGAAACCGGTCACTTGGTATTCGGCACCCTGCATACTTCATCTGCCGCCAAGACTATCGACCGTATT
GTTGACGTATTCCCGGCGGAAGAAAAAGAGATGGTGCGTTCGATGTTGTCAGAATCCCTGCAAGCGGTCATCTCGCAAAC
CCTGCTGAAAACCAAGGATGGCTCTGGCCGTGTGGCAGCGCATGAAATCATGCTGGGTACACCAGCGATACGCAACCTGA
TCCGCGAAGCCAAGATTGCGCAGATGTATTCGTCGATACAAACCGGTAGTAACCTGGGCATGCAGACACTGGATCAAAAT
CTGACTGATCTGGTACGCCGCAATGTCATCTCGGTGGCGACTGCACGTGGTGCAGCCAAAACACCAGACAATTTCCCAGG
CTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809QGS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

76.812

99.424

0.764
  pilT Acinetobacter baumannii strain A118

76.812

99.424

0.764
  pilT Acinetobacter nosocomialis M2

76.812

99.424

0.764
  pilT Pseudomonas aeruginosa PAK

76.232

99.424

0.758
  pilT Pseudomonas stutzeri DSM 10701

75.652

99.424

0.752
  pilT Acinetobacter baylyi ADP1

74.493

99.424

0.741
  pilT Legionella pneumophila strain Lp02

75.516

97.695

0.738
  pilT Legionella pneumophila strain ERS1305867

75.516

97.695

0.738
  pilT Neisseria meningitidis 8013

68.116

99.424

0.677
  pilT Neisseria gonorrhoeae MS11

67.826

99.424

0.674
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70

95.101

0.666
  pilT Vibrio cholerae strain A1552

70

95.101

0.666
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.725

99.424

0.504
  pilU Acinetobacter baylyi ADP1

41.908

99.712

0.418
  pilU Vibrio cholerae strain A1552

40.87

99.424

0.406
  pilU Pseudomonas stutzeri DSM 10701

40.896

96.542

0.395

Multiple sequence alignment