Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   UNDYM_RS04460 Genome accession   NZ_AP018441
Coordinates   972071..973207 (-) Length   378 a.a.
NCBI ID   WP_162039952.1    Uniprot ID   -
Organism   Undibacterium sp. YM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 967071..978207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDYM_RS04440 (UNDYM_0898) - 967707..969185 (+) 1479 WP_162039948.1 FAD-linked oxidase C-terminal domain-containing protein -
  UNDYM_RS04445 (UNDYM_0899) glcE 969217..970281 (+) 1065 WP_162039949.1 glycolate oxidase subunit GlcE -
  UNDYM_RS04450 (UNDYM_0900) glcF 970285..971535 (+) 1251 WP_162039950.1 glycolate oxidase subunit GlcF -
  UNDYM_RS04455 (UNDYM_0901) - 971592..972074 (-) 483 WP_162039951.1 glutathione peroxidase -
  UNDYM_RS04460 (UNDYM_0902) pilU 972071..973207 (-) 1137 WP_162039952.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  UNDYM_RS04465 (UNDYM_0903) pilT 973227..974270 (-) 1044 WP_162039953.1 type IV pilus twitching motility protein PilT Machinery gene
  UNDYM_RS04470 (UNDYM_0904) - 974405..975109 (+) 705 WP_162039954.1 YggS family pyridoxal phosphate-dependent enzyme -
  UNDYM_RS04475 (UNDYM_0905) proC 975099..975923 (+) 825 WP_162039955.1 pyrroline-5-carboxylate reductase -
  UNDYM_RS04480 (UNDYM_0906) - 975943..976278 (-) 336 WP_162039956.1 YqjK family protein -
  UNDYM_RS04485 (UNDYM_0907) - 976282..976671 (-) 390 WP_162039957.1 phage holin family protein -
  UNDYM_RS04490 (UNDYM_0908) - 976687..976998 (-) 312 WP_162039958.1 YqjD family protein -
  UNDYM_RS04495 (UNDYM_0909) ubiA 977129..977995 (-) 867 WP_174244923.1 4-hydroxybenzoate octaprenyltransferase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 41831.18 Da        Isoelectric Point: 6.7721

>NTDB_id=69629 UNDYM_RS04460 WP_162039952.1 972071..973207(-) (pilU) [Undibacterium sp. YM2]
MERDQATKFMNDLLRLMLSKNGSDLFITADFPPAFKIDGRVTPVSNQPLSPAHTVDLARSIMNDKQSSEFESTKECNFAI
SPAGLGRFRVSAFMQQGRVGLVLRTITTAIPKLEDLGLPENLKEIAMTKRGLVIMVGATGSGKSTSLAAMLGYRNANSYG
HIITIEDPIEYVHPHMNCIITQREIGIDTDDWGAALKNSLRQAPDVIQIGEIRDRETMDFAVAFAETGHLCLATLHANSS
NQALDRIINFFPEERRAQLLMDLSLNLKAVISQRLVPLKGRKGRAAAVEIMLNTPLVSDLIFKGAVHEIKEIMKKSRELG
MQTFDQSLFDLHEADQITYEDALRNADSVNELRLAIMLKGKDAKDRDLSAGTKHLGIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=69629 UNDYM_RS04460 WP_162039952.1 972071..973207(-) (pilU) [Undibacterium sp. YM2]
ATGGAACGCGATCAGGCCACCAAATTCATGAATGATTTGCTGAGACTCATGCTCAGCAAAAACGGTTCAGACTTGTTTAT
TACTGCAGACTTCCCGCCTGCCTTCAAGATAGACGGGCGGGTAACGCCAGTGTCGAACCAACCTTTGTCCCCTGCCCATA
CTGTCGATCTGGCCCGTTCTATCATGAACGACAAGCAGTCTTCAGAATTTGAGTCGACCAAGGAATGTAATTTCGCGATC
AGCCCTGCTGGACTCGGGCGCTTCCGCGTCTCGGCCTTCATGCAGCAAGGCCGCGTTGGCCTGGTCTTGCGGACAATCAC
CACGGCCATTCCCAAACTCGAAGACCTGGGGCTGCCAGAAAACCTCAAAGAAATCGCCATGACCAAGCGCGGTCTGGTCA
TCATGGTAGGTGCTACCGGTTCAGGTAAATCCACCTCGCTGGCGGCCATGCTGGGGTACAGAAACGCAAACAGCTACGGG
CACATCATCACGATCGAAGACCCGATAGAATATGTGCACCCGCACATGAATTGCATCATCACCCAGCGTGAGATCGGCAT
TGATACTGACGACTGGGGCGCGGCGCTGAAAAACTCCCTGCGTCAGGCGCCAGACGTTATCCAGATCGGTGAGATTCGTG
ACCGCGAAACCATGGACTTTGCCGTTGCCTTTGCAGAAACCGGCCATCTTTGCCTGGCCACCCTGCATGCGAATAGTTCC
AACCAGGCACTAGACCGTATCATCAACTTCTTCCCTGAAGAGCGCCGTGCCCAGTTGCTGATGGATTTGTCCCTGAACTT
GAAGGCGGTTATTTCCCAGCGCCTGGTACCGCTGAAGGGCCGCAAAGGCCGGGCTGCTGCCGTGGAAATCATGCTCAATA
CGCCGCTGGTGTCTGACCTGATTTTCAAAGGTGCGGTACATGAAATCAAAGAGATCATGAAAAAATCCCGTGAACTCGGT
ATGCAAACCTTCGATCAGTCTTTGTTTGATCTGCATGAAGCAGACCAGATCACGTATGAAGATGCGCTGCGCAATGCCGA
CTCTGTCAATGAGCTGCGCCTGGCCATCATGTTGAAAGGCAAAGATGCCAAGGACCGTGACCTCAGTGCTGGCACCAAAC
ATCTGGGCATCGTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

65.029

91.534

0.595
  pilU Acinetobacter baylyi ADP1

59.053

94.974

0.561
  pilU Vibrio cholerae strain A1552

54.213

94.18

0.511
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.38

91.799

0.407
  pilT Pseudomonas aeruginosa PAK

42.136

89.153

0.376
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

44.304

83.598

0.37
  pilT Vibrio cholerae strain A1552

44.304

83.598

0.37
  pilT Pseudomonas stutzeri DSM 10701

41.246

89.153

0.368
  pilT Acinetobacter baylyi ADP1

42.547

85.185

0.362
  pilT Legionella pneumophila strain ERS1305867

42.812

84.656

0.362
  pilT Legionella pneumophila strain Lp02

42.812

84.656

0.362

Multiple sequence alignment