Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   LpnA194_RS04430 Genome accession   NZ_CP114578
Coordinates   970255..972081 (-) Length   608 a.a.
NCBI ID   WP_027268087.1    Uniprot ID   -
Organism   Legionella pneumophila strain A194     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 965255..977081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnA194_RS04395 (LpnA194_00879) - 965284..967236 (+) 1953 WP_027268083.1 heme lyase CcmF/NrfE family subunit -
  LpnA194_RS04400 (LpnA194_00880) - 967233..967766 (+) 534 WP_027268084.1 DsbE family thiol:disulfide interchange protein -
  LpnA194_RS04405 (LpnA194_00881) - 967766..968167 (+) 402 WP_027224043.1 cytochrome c-type biogenesis protein -
  LpnA194_RS04410 (LpnA194_00882) - 968160..968846 (+) 687 WP_027268085.1 tetratricopeptide repeat protein -
  LpnA194_RS04415 (LpnA194_00883) - 968836..969039 (+) 204 WP_011213332.1 dodecin -
  LpnA194_RS04420 (LpnA194_00884) - 969095..969499 (+) 405 WP_010946601.1 DUF4156 domain-containing protein -
  LpnA194_RS04425 (LpnA194_00885) - 969694..970245 (-) 552 WP_027268086.1 DNA-3-methyladenine glycosylase -
  LpnA194_RS04430 (LpnA194_00886) recQ 970255..972081 (-) 1827 WP_027268087.1 DNA helicase RecQ Machinery gene
  LpnA194_RS04435 (LpnA194_00887) - 972195..973349 (+) 1155 WP_010946604.1 acyl-CoA dehydrogenase family protein -
  LpnA194_RS04440 (LpnA194_00888) - 973366..974142 (+) 777 WP_011213333.1 enoyl-CoA hydratase/isomerase family protein -
  LpnA194_RS04445 (LpnA194_00889) - 974145..975203 (+) 1059 WP_027268088.1 enoyl-CoA hydratase/isomerase family protein -
  LpnA194_RS04450 (LpnA194_00890) - 975369..976235 (-) 867 WP_027268089.1 Lpg0189 family type II secretion system effector -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 68852.83 Da        Isoelectric Point: 8.0139

>NTDB_id=693165 LpnA194_RS04430 WP_027268087.1 970255..972081(-) (recQ) [Legionella pneumophila strain A194]
MGTLAQPSFINPNALAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRPGVGIVVSPLIALME
DQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPERLISTSFLDRLSECTISLFAIDEAHCISQWGHDFR
PEYACLGLLKTNFPDIPMIALTATADKQTREDIVTKLNYQPKKYVVSFNRPNIHYKVVPKTNAVKQLNLFLQSDTQQSGI
IYCGTRHTVEHLTAKLQELGFKARAYHAGLPHAERREVQNLFRYDRIDIVVATIAFGMGIDKPNVRFVVHHDLPKSIEGY
YQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLDEQRHIETNKLNHMLAFAEASHCRRQILLRYFDEPSHTECKNC
DVCDNPPQTADATEDAQKFLSCIYRLKQSYGLTHTIDVLRGSLSEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKD
YCLQDMNHFNVLRLTSKAIPLLKGEESISLTIPNNDLNSSKKKGKQNPSFKPESNPLFEKLRALRRQLADEENKPPFMIF
SDATLHEMAQSKPKNSKQLLNVSGVGQHKLARYGHYFLEALNEFSEVE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=693165 LpnA194_RS04430 WP_027268087.1 970255..972081(-) (recQ) [Legionella pneumophila strain A194]
ATGGGAACTTTAGCGCAACCATCTTTTATAAATCCAAACGCATTAGCTGTTTTAAAAAAATATTTTGGATTTGATTCCTT
CAGACCTCCTCAGGAAAAAATAATTGAGGATGTCATTTCTGGGGAAGATGTACTGGTTTTGATGCCTACTGGAGGGGGAA
AATCGCTTTGCTATCAAATTCCAGCCATTGTCCGCCCTGGTGTTGGCATTGTAGTATCTCCTTTAATCGCGTTAATGGAA
GATCAAGTAACCGCTCTCAAACTGCAGGGTATTCGTGCGGCTTACTACAACTCATCCTTAACCGCCGAAGAGGCTAGAAA
TGTATTAAATCAATTACATCATAATGAATTGGATTTACTCTATATTGCTCCAGAACGTCTTATTAGTACCTCGTTTCTGG
ATCGGCTGTCAGAATGTACTATCTCTTTATTTGCTATCGATGAAGCACACTGTATTTCACAATGGGGACATGATTTTCGA
CCTGAATACGCCTGTTTAGGTTTACTGAAAACTAACTTTCCTGACATTCCTATGATTGCTCTGACAGCTACTGCCGATAA
GCAAACACGTGAGGATATTGTTACCAAGTTGAATTATCAACCCAAAAAATACGTTGTTTCATTCAATCGACCGAATATCC
ATTACAAAGTAGTTCCTAAAACAAATGCAGTGAAGCAACTAAATCTGTTTTTACAATCTGATACCCAGCAATCCGGAATT
ATTTATTGTGGAACCCGCCATACAGTCGAACATCTTACAGCGAAATTACAAGAACTTGGATTTAAAGCACGCGCTTATCA
TGCAGGCCTGCCTCATGCGGAGCGGCGTGAGGTGCAAAACCTTTTCAGATACGATCGCATTGATATTGTGGTAGCTACTA
TTGCTTTTGGAATGGGTATTGACAAGCCTAATGTTCGCTTTGTTGTTCACCATGATTTACCCAAAAGCATCGAAGGTTAC
TACCAGGAAACAGGTCGTGCAGGGCGTGACGGATTACCGGCCAAGGCCCTTCTTCTTTATGATGCTGCGGATAGTGCCCG
TTTGCGGTCCTGGATCATGAACATTCCTCTTGATGAGCAAAGACATATAGAAACCAATAAATTAAATCATATGCTTGCTT
TTGCTGAAGCGTCGCATTGTCGTCGTCAAATTTTATTACGCTATTTTGATGAACCTTCTCATACAGAATGTAAAAACTGT
GATGTCTGCGATAACCCACCGCAAACAGCCGATGCAACAGAAGATGCGCAAAAATTTTTATCGTGTATTTATCGATTAAA
ACAAAGCTATGGTTTAACTCATACTATTGATGTCCTGAGAGGTAGTTTATCTGAAAAAATCAAGCAGTCTGGGCATGAGC
ATTTAAGTACCTTTGGAATTGGGAAGGAGAAATCTGCCAATTATTGGAAGCATCTTGCCTGGCAATTAATTCATAAAGAT
TATTGTTTACAGGACATGAATCATTTTAATGTGTTACGCTTGACCTCAAAAGCGATTCCCCTCCTAAAAGGTGAAGAGAG
TATTTCATTAACCATTCCTAACAATGACCTGAATAGCAGTAAAAAGAAAGGCAAGCAGAATCCTTCCTTTAAACCTGAAA
GTAACCCATTATTTGAAAAGCTTCGTGCGTTAAGACGTCAGTTAGCCGATGAAGAAAACAAACCACCATTTATGATATTC
AGTGATGCTACATTACATGAAATGGCCCAATCAAAACCCAAAAACAGTAAGCAACTACTGAATGTATCTGGGGTTGGGCA
ACATAAATTAGCTCGTTATGGCCATTATTTTCTCGAAGCCTTAAACGAATTTTCAGAAGTCGAGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(29-189)

Helicase conserved C-terminal domain (Helicase_C)

(231-330)

RecQ zinc-binding (RecQ_Zn_bind)

(343-403)

HRDC domain (HRDC)

(536-601)

RQC domain (RQC)

(406-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.363

98.191

0.387