Detailed information NTG0689577

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OSZ59_RS19510
• Genome accession: NZ_CP113106
• Coordinates: 4202402..4203406 (-)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain BIAI 157
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4197402..4208406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSZ59_RS19495 (OSZ59_19495)	-	4197885..4198892 (+)	1008	WP_003098486.1	TolB family protein	-
OSZ59_RS19500 (OSZ59_19500)	mutS	4199018..4201585 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
OSZ59_RS19505 (OSZ59_19505)	fdxA	4201652..4201975 (+)	324	WP_003092272.1	ferredoxin FdxA	-
OSZ59_RS19510 (OSZ59_19510)	rpoS	4202402..4203406 (-)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
OSZ59_RS19515 (OSZ59_19515)	-	4203511..4204404 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
OSZ59_RS19520 (OSZ59_19520)	-	4204450..4205085 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OSZ59_RS19525 (OSZ59_19525)	surE	4205118..4205867 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
OSZ59_RS19530 (OSZ59_19530)	truD	4205855..4206922 (-)	1068	WP_033937525.1	tRNA pseudouridine(13) synthase TruD	-
OSZ59_RS19535 (OSZ59_19535)	ispF	4206919..4207392 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OSZ59_RS19540 (OSZ59_19540)	fghA	4207463..4208314 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=689577 OSZ59_RS19510 WP_003143264.1 4202402..4203406(-) (rpoS) [Pseudomonas aeruginosa strain BIAI 157]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=689577 OSZ59_RS19510 WP_003143264.1 4202402..4203406(-) (rpoS) [Pseudomonas aeruginosa strain BIAI 157]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611