Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | sS8_RS01445 | Genome accession | NZ_AP017928 |
| Coordinates | 305454..306488 (-) | Length | 344 a.a. |
| NCBI ID | WP_119628096.1 | Uniprot ID | A0A286P3P9 |
| Organism | Methylocaldum marinum strain S8 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 300454..311488
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| sS8_RS01430 (sS8_0300) | mutL | 301490..303277 (+) | 1788 | WP_119628093.1 | DNA mismatch repair endonuclease MutL | - |
| sS8_RS01435 (sS8_0301) | miaA | 303310..304218 (+) | 909 | WP_232020694.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| sS8_RS01440 (sS8_0302) | pilU | 304315..305436 (-) | 1122 | WP_119628095.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| sS8_RS01445 (sS8_0303) | pilT | 305454..306488 (-) | 1035 | WP_119628096.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| sS8_RS01450 (sS8_0304) | - | 306577..307302 (+) | 726 | WP_119628097.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| sS8_RS01455 (sS8_0305) | proC | 307390..308214 (+) | 825 | WP_119628098.1 | pyrroline-5-carboxylate reductase | - |
| sS8_RS01460 (sS8_0306) | - | 308217..308792 (+) | 576 | WP_119628099.1 | YggT family protein | - |
| sS8_RS01465 (sS8_0307) | - | 308794..309093 (+) | 300 | WP_119628100.1 | DUF167 family protein | - |
| sS8_RS01470 (sS8_0308) | - | 309174..311159 (+) | 1986 | WP_119628101.1 | dynamin family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38121.64 Da Isoelectric Point: 6.8930
>NTDB_id=68516 sS8_RS01445 WP_119628096.1 305454..306488(-) (pilT) [Methylocaldum marinum strain S8]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDIRRINVPALDHKEVHALIYDIMNDKQRRDYEEFLETDFSFELPGVAR
FRVNAFNQDRGSAAVFRTIPSKVLTLEELGCPKFFQEVTMHPRGLIVVTGPTGSGKSTTLAAMIDHVNSNQYSHILTIED
PIEFVHSSKKSLINQREVHRDTLGFNEALRSALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKTIDRV
IDVFPAAEKGIIRSMLSESLQAVISQTLLKKTGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGRKDGMQTLDQHL
QELVERGVVARNTARAKAVNKAAF
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDIRRINVPALDHKEVHALIYDIMNDKQRRDYEEFLETDFSFELPGVAR
FRVNAFNQDRGSAAVFRTIPSKVLTLEELGCPKFFQEVTMHPRGLIVVTGPTGSGKSTTLAAMIDHVNSNQYSHILTIED
PIEFVHSSKKSLINQREVHRDTLGFNEALRSALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKTIDRV
IDVFPAAEKGIIRSMLSESLQAVISQTLLKKTGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGRKDGMQTLDQHL
QELVERGVVARNTARAKAVNKAAF
Nucleotide
Download Length: 1035 bp
>NTDB_id=68516 sS8_RS01445 WP_119628096.1 305454..306488(-) (pilT) [Methylocaldum marinum strain S8]
ATGGATATCGCCGAACTACTCGCTTTCTCCGTAAAGAACAACGCATCCGACTTGCACTTGTCGGCCGGGCTTCCGCCCAT
GATCCGGGTGGATGGCGATATACGCCGTATCAACGTGCCGGCGCTGGATCACAAGGAAGTACATGCGCTGATTTACGACA
TCATGAATGACAAGCAGCGACGCGATTACGAGGAGTTCCTGGAAACCGACTTTTCTTTCGAACTTCCCGGCGTCGCCCGT
TTTCGCGTCAACGCGTTCAACCAGGACCGCGGCTCGGCGGCCGTATTTCGAACCATTCCGTCCAAAGTGCTGACCCTGGA
GGAATTGGGCTGTCCCAAGTTCTTCCAGGAAGTCACCATGCATCCCCGCGGCCTGATTGTCGTCACGGGTCCCACCGGCT
CAGGCAAATCGACCACGCTCGCCGCGATGATCGACCACGTCAATTCGAACCAATACTCCCACATTCTGACGATCGAAGAC
CCCATAGAGTTCGTCCATTCGAGCAAGAAATCCTTGATCAACCAGCGCGAGGTGCACCGCGACACCCTGGGTTTCAACGA
AGCCTTGCGCTCGGCTCTCCGTGAAGATCCCGACGTGATTCTGGTCGGCGAAATGCGCGATCTGGAAACCATTCGTCTCG
CGCTGACCGCAGCCGAAACCGGCCATCTGGTATTCGGCACCCTGCATACCAATTCCGCGGCCAAGACCATAGACCGCGTC
ATCGACGTTTTCCCTGCGGCCGAGAAAGGCATTATTCGTTCCATGCTGTCCGAGTCCCTGCAAGCCGTCATCTCCCAAAC
CCTGCTCAAGAAGACCGGGGGCGGGCGCACGGCTGCCTGGGAAATCATGGTGGGCACCCCGGCGATCCGCAATCTCATCC
GCGAAGACAAGGTCGCCCAGATGTACTCGGCGATACAGACCGGGCGCAAGGACGGCATGCAAACGCTCGACCAGCATTTG
CAGGAACTGGTCGAAAGAGGGGTCGTGGCGCGCAACACCGCGCGGGCCAAGGCCGTCAACAAAGCTGCTTTCTAA
ATGGATATCGCCGAACTACTCGCTTTCTCCGTAAAGAACAACGCATCCGACTTGCACTTGTCGGCCGGGCTTCCGCCCAT
GATCCGGGTGGATGGCGATATACGCCGTATCAACGTGCCGGCGCTGGATCACAAGGAAGTACATGCGCTGATTTACGACA
TCATGAATGACAAGCAGCGACGCGATTACGAGGAGTTCCTGGAAACCGACTTTTCTTTCGAACTTCCCGGCGTCGCCCGT
TTTCGCGTCAACGCGTTCAACCAGGACCGCGGCTCGGCGGCCGTATTTCGAACCATTCCGTCCAAAGTGCTGACCCTGGA
GGAATTGGGCTGTCCCAAGTTCTTCCAGGAAGTCACCATGCATCCCCGCGGCCTGATTGTCGTCACGGGTCCCACCGGCT
CAGGCAAATCGACCACGCTCGCCGCGATGATCGACCACGTCAATTCGAACCAATACTCCCACATTCTGACGATCGAAGAC
CCCATAGAGTTCGTCCATTCGAGCAAGAAATCCTTGATCAACCAGCGCGAGGTGCACCGCGACACCCTGGGTTTCAACGA
AGCCTTGCGCTCGGCTCTCCGTGAAGATCCCGACGTGATTCTGGTCGGCGAAATGCGCGATCTGGAAACCATTCGTCTCG
CGCTGACCGCAGCCGAAACCGGCCATCTGGTATTCGGCACCCTGCATACCAATTCCGCGGCCAAGACCATAGACCGCGTC
ATCGACGTTTTCCCTGCGGCCGAGAAAGGCATTATTCGTTCCATGCTGTCCGAGTCCCTGCAAGCCGTCATCTCCCAAAC
CCTGCTCAAGAAGACCGGGGGCGGGCGCACGGCTGCCTGGGAAATCATGGTGGGCACCCCGGCGATCCGCAATCTCATCC
GCGAAGACAAGGTCGCCCAGATGTACTCGGCGATACAGACCGGGCGCAAGGACGGCATGCAAACGCTCGACCAGCATTTG
CAGGAACTGGTCGAAAGAGGGGTCGTGGCGCGCAACACCGCGCGGGCCAAGGCCGTCAACAAAGCTGCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
80.473 |
98.256 |
0.791 |
| pilT | Acinetobacter nosocomialis M2 |
78.779 |
100 |
0.788 |
| pilT | Acinetobacter baumannii D1279779 |
78.779 |
100 |
0.788 |
| pilT | Acinetobacter baumannii strain A118 |
78.779 |
100 |
0.788 |
| pilT | Pseudomonas stutzeri DSM 10701 |
78.779 |
100 |
0.788 |
| pilT | Acinetobacter baylyi ADP1 |
77.616 |
100 |
0.776 |
| pilT | Legionella pneumophila strain Lp02 |
73.256 |
100 |
0.733 |
| pilT | Legionella pneumophila strain ERS1305867 |
73.256 |
100 |
0.733 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.733 |
97.965 |
0.683 |
| pilT | Vibrio cholerae strain A1552 |
69.733 |
97.965 |
0.683 |
| pilT | Neisseria meningitidis 8013 |
66.667 |
100 |
0.669 |
| pilT | Neisseria gonorrhoeae MS11 |
66.377 |
100 |
0.666 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.014 |
100 |
0.512 |
| pilU | Acinetobacter baylyi ADP1 |
41.284 |
95.058 |
0.392 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.104 |
97.384 |
0.381 |
| pilU | Vibrio cholerae strain A1552 |
40 |
94.477 |
0.378 |