Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PALA30_RS03975 Genome accession   NZ_CP110345
Coordinates   832793..833290 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PALA30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 827793..838290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA30_RS03960 (PALA30_00780) bfr 827801..828265 (+) 465 WP_003093668.1 bacterioferritin -
  PALA30_RS03965 (PALA30_00781) uvrA 828337..831174 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  PALA30_RS03970 (PALA30_00782) - 831388..832776 (+) 1389 WP_009316331.1 MFS transporter -
  PALA30_RS03975 (PALA30_00783) ssb 832793..833290 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PALA30_RS03980 (PALA30_00784) pchA 833379..834809 (-) 1431 WP_003129314.1 isochorismate synthase PchA -
  PALA30_RS03985 (PALA30_00785) pchB 834806..835111 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  PALA30_RS03990 (PALA30_00786) pchC 835111..835866 (-) 756 WP_019486336.1 pyochelin biosynthesis editing thioesterase PchC -
  PALA30_RS03995 (PALA30_00787) pchD 835863..837506 (-) 1644 WP_003106954.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=683738 PALA30_RS03975 WP_003114685.1 832793..833290(+) (ssb) [Pseudomonas aeruginosa strain PALA30]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=683738 PALA30_RS03975 WP_003114685.1 832793..833290(+) (ssb) [Pseudomonas aeruginosa strain PALA30]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515