Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   M1F49_RS08275 Genome accession   NZ_CP096530
Coordinates   1679953..1680399 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M084526     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1677889..1679061 1679953..1680399 flank 892


Gene organization within MGE regions


Location: 1677889..1680399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F49_RS08260 (M1F49_08255) - 1677889..1679061 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  M1F49_RS08265 (M1F49_08260) comGF 1679252..1679749 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  M1F49_RS08270 (M1F49_08265) comGE 1679667..1679966 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  M1F49_RS08275 (M1F49_08270) comGD 1679953..1680399 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=681564 M1F49_RS08275 WP_001796473.1 1679953..1680399(-) (comGD) [Staphylococcus aureus strain RIVM_M084526]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=681564 M1F49_RS08275 WP_001796473.1 1679953..1680399(-) (comGD) [Staphylococcus aureus strain RIVM_M084526]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993