Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M0D48_RS04980 Genome accession   NZ_CP096141
Coordinates   1146733..1147158 (+) Length   141 a.a.
NCBI ID   WP_252162273.1    Uniprot ID   A0A9Q9IWS2
Organism   Xanthomonas prunicola strain CIX383     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141733..1152158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D48_RS04965 (M0D48_04965) coaE 1143627..1144235 (-) 609 WP_101361876.1 dephospho-CoA kinase -
  M0D48_RS04970 (M0D48_04970) - 1144249..1145112 (-) 864 WP_252162272.1 A24 family peptidase -
  M0D48_RS04975 (M0D48_04975) pilC 1145119..1146378 (-) 1260 WP_252165099.1 type II secretion system F family protein Machinery gene
  M0D48_RS04980 (M0D48_04980) pilA 1146733..1147158 (+) 426 WP_252162273.1 pilin Machinery gene
  M0D48_RS04985 (M0D48_04985) - 1147293..1148882 (+) 1590 WP_260807378.1 phosphoethanolamine transferase -
  M0D48_RS04990 (M0D48_04990) - 1148893..1149522 (+) 630 WP_252165100.1 hypothetical protein -
  M0D48_RS04995 (M0D48_04995) - 1149492..1151018 (+) 1527 WP_313905434.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14371.60 Da        Isoelectric Point: 9.0171

>NTDB_id=679651 M0D48_RS04980 WP_252162273.1 1146733..1147158(+) (pilA) [Xanthomonas prunicola strain CIX383]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETSSSLGGLAQVTAANSGYSFPGATK
YVSGVTIASGTGQVAVTSTVPNATGTLLLTPVDVGGGQLKWTCSSAINVKYLPAECRNSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=679651 M0D48_RS04980 WP_252162273.1 1146733..1147158(+) (pilA) [Xanthomonas prunicola strain CIX383]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGCGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAGCTTGCGGTAA
CGGAGACTTCATCGTCGCTCGGCGGCCTCGCTCAGGTTACTGCGGCAAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCGGTGTCACTATCGCCAGTGGCACGGGCCAAGTCGCTGTAACCTCCACCGTGCCGAACGCAACCGGTACCCT
CCTGCTGACCCCGGTTGATGTCGGTGGTGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCAACGTCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

42.073

100

0.489
  pilA2 Legionella pneumophila str. Paris

49.265

96.454

0.475
  pilA2 Legionella pneumophila strain ERS1305867

49.265

96.454

0.475
  comP Acinetobacter baylyi ADP1

44.898

100

0.468
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.054

100

0.447
  pilE Neisseria gonorrhoeae strain FA1090

38.608

100

0.433
  pilA/pilA1 Eikenella corrodens VA1

40

100

0.426
  pilE Neisseria gonorrhoeae MS11

36.25

100

0.411
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.741

95.745

0.39
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.855

97.872

0.39
  pilA Pseudomonas aeruginosa PAK

35.065

100

0.383
  pilA Acinetobacter baumannii strain A118

36.054

100

0.376