Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M0D48_RS05010 Genome accession   NZ_CP096141
Coordinates   1153499..1154953 (-) Length   484 a.a.
NCBI ID   WP_313905435.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain CIX383     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1151718..1162259 1153499..1154953 within 0


Gene organization within MGE regions


Location: 1151718..1162259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D48_RS05005 (M0D48_05005) - 1152858..1152977 (+) 120 WP_260807379.1 pilus assembly protein -
  M0D48_RS05010 (M0D48_05010) pilR 1153499..1154953 (-) 1455 WP_313905435.1 sigma-54 dependent transcriptional regulator Regulator
  M0D48_RS05015 (M0D48_05015) - 1155224..1156837 (-) 1614 WP_260807381.1 HAMP domain-containing sensor histidine kinase -
  M0D48_RS05020 (M0D48_05020) sucC 1157069..1158238 (+) 1170 WP_101361865.1 ADP-forming succinate--CoA ligase subunit beta -
  M0D48_RS05025 (M0D48_05025) sucD 1158263..1159138 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  M0D48_RS05030 (M0D48_05030) - 1159544..1159915 (+) 372 WP_252162277.1 DUF559 domain-containing protein -
  M0D48_RS05035 (M0D48_05035) - 1159938..1161578 (+) 1641 WP_252162278.1 NAD+ synthase -
  M0D48_RS05040 (M0D48_05040) - 1161804..1162259 (+) 456 WP_252162279.1 HIT family protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52471.19 Da        Isoelectric Point: 6.7822

>NTDB_id=679652 M0D48_RS05010 WP_313905435.1 1153499..1154953(-) (pilR) [Xanthomonas prunicola strain CIX383]
MSRDPVDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHGHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=679652 M0D48_RS05010 WP_313905435.1 1153499..1154953(-) (pilR) [Xanthomonas prunicola strain CIX383]
TTGAGCCGCGACCCGGTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGGCTGCGCATCAGCACCG
CCGCCAATCTGGCCGAAGCCCGCGAATTGCTGGCGAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCTGAC
GGCAATGGCATCGAACTGGTCACCGAAATCGCCAGACAGTACCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCAGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCCGCGCCACCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTTTACAT
CGTCGGTGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACTATCCACGAGCAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCCCACGGCGGTACGTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGCCCGGTTGGCGCCTCCAGCGAATCGCTGGTGG
ATGTGCGCATTCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCACCGCTGCGCGAACGCGGCGGCGACTTGCCGCAACTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACGGTCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTAGACGCACTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCTCGCCGCCACGCCCGGCAGCGCCGCCGTCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAG
TTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.696

95.041

0.605
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469