Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | MT343_RS18030 | Genome accession | NZ_CP094879 |
| Coordinates | 4005302..4006336 (-) | Length | 344 a.a. |
| NCBI ID | WP_145467870.1 | Uniprot ID | - |
| Organism | Thalassolituus sp. C2-1 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4000302..4011336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MT343_RS18010 | - | 4001179..4001967 (-) | 789 | WP_225691082.1 | ABC transporter permease | - |
| MT343_RS18015 | - | 4001960..4002745 (-) | 786 | WP_145467876.1 | ABC transporter ATP-binding protein | - |
| MT343_RS18020 | - | 4002747..4003754 (-) | 1008 | WP_145467874.1 | ABC transporter substrate-binding protein | - |
| MT343_RS18025 | pilU | 4004175..4005290 (-) | 1116 | WP_145467872.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| MT343_RS18030 | pilT | 4005302..4006336 (-) | 1035 | WP_145467870.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| MT343_RS18035 | - | 4006464..4007165 (+) | 702 | WP_145467868.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| MT343_RS18040 | proC | 4007271..4008092 (+) | 822 | WP_145467866.1 | pyrroline-5-carboxylate reductase | - |
| MT343_RS18045 | - | 4008230..4008817 (+) | 588 | WP_145467864.1 | YggT family protein | - |
| MT343_RS18050 | - | 4008814..4009125 (+) | 312 | WP_145467862.1 | DUF167 family protein | - |
| MT343_RS18055 | dauA | 4009232..4010935 (+) | 1704 | WP_145467860.1 | C4-dicarboxylic acid transporter DauA | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38001.61 Da Isoelectric Point: 6.6677
>NTDB_id=673864 MT343_RS18030 WP_145467870.1 4005302..4006336(-) (pilT) [Thalassolituus sp. C2-1]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPALGHKEVHSLVYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMDQLGMGQVFKDLAKIPRGIVLVTGPTGSGKSTTLAAMIDYINESKYDHILTVED
PIEFVHESKKSLVNQREVHRDTLGFNEALRSALREDPDVILVGEMRDLETIRLALTAAETGHIVFGTLHTSSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQGVISQTLLKKNGGGRVAAHEIMVGTPAIRNLIREDKIAQMYSAIQTGSAYGMQTMDQCL
QNLLNKGLISRDVAREKAKIPDNF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPALGHKEVHSLVYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNHNRGAGAVFRTIPSKVLTMDQLGMGQVFKDLAKIPRGIVLVTGPTGSGKSTTLAAMIDYINESKYDHILTVED
PIEFVHESKKSLVNQREVHRDTLGFNEALRSALREDPDVILVGEMRDLETIRLALTAAETGHIVFGTLHTSSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQGVISQTLLKKNGGGRVAAHEIMVGTPAIRNLIREDKIAQMYSAIQTGSAYGMQTMDQCL
QNLLNKGLISRDVAREKAKIPDNF
Nucleotide
Download Length: 1035 bp
>NTDB_id=673864 MT343_RS18030 WP_145467870.1 4005302..4006336(-) (pilT) [Thalassolituus sp. C2-1]
ATGGATATTACTGAACTGCTTGCCTTCAGTGCCAAGCAAGGCGCGTCGGATCTGCATTTATCGGCCGGCTTGCCGCCAAT
GATCCGGGTTGATGGCGATGTGCGCCGTATCAACCTGCCAGCACTGGGGCATAAAGAAGTTCATAGCCTGGTGTATGACA
TCATGAACGATAAGCAGCGTAAGGATTTCGAAGAATTCCTTGAGACTGACTTCTCGTTCGAAGTACCGGGTGTGGCGCGT
TTCCGTGTAAACGCCTTTAACCACAACCGCGGTGCCGGTGCGGTATTCCGTACCATTCCGTCGAAAGTTCTGACCATGGA
CCAGCTGGGCATGGGTCAGGTGTTCAAAGATCTGGCGAAGATTCCACGCGGTATCGTATTGGTTACCGGCCCGACCGGTT
CCGGTAAATCGACCACGCTGGCGGCGATGATCGACTATATCAACGAAAGCAAATACGACCACATCCTCACCGTGGAAGAC
CCGATCGAATTCGTACACGAATCGAAAAAATCGCTGGTTAACCAGCGTGAAGTTCACCGTGACACCTTAGGCTTTAACGA
AGCACTGCGTTCGGCGCTGCGTGAAGACCCGGATGTGATTCTGGTGGGTGAGATGCGTGACCTTGAAACCATCCGTCTGG
CGCTGACCGCGGCAGAAACCGGTCATATTGTATTCGGCACCCTGCACACCAGCTCGGCGGCAAAAACCATCGACCGTATC
GTCGACGTATTCCCGGCGGAAGAAAAATCCATGGTGCGCTCCATGCTGTCGGAATCTTTGCAGGGGGTTATTTCCCAGAC
TCTGCTGAAGAAGAATGGCGGCGGCCGGGTTGCGGCCCACGAAATCATGGTGGGTACACCGGCCATCCGTAACCTGATCC
GTGAAGATAAAATTGCCCAGATGTATTCGGCCATTCAGACCGGTTCGGCTTACGGTATGCAGACCATGGATCAGTGCCTG
CAGAACCTGTTGAACAAAGGTCTGATCAGCCGGGATGTGGCGCGTGAAAAAGCCAAAATCCCGGATAATTTCTGA
ATGGATATTACTGAACTGCTTGCCTTCAGTGCCAAGCAAGGCGCGTCGGATCTGCATTTATCGGCCGGCTTGCCGCCAAT
GATCCGGGTTGATGGCGATGTGCGCCGTATCAACCTGCCAGCACTGGGGCATAAAGAAGTTCATAGCCTGGTGTATGACA
TCATGAACGATAAGCAGCGTAAGGATTTCGAAGAATTCCTTGAGACTGACTTCTCGTTCGAAGTACCGGGTGTGGCGCGT
TTCCGTGTAAACGCCTTTAACCACAACCGCGGTGCCGGTGCGGTATTCCGTACCATTCCGTCGAAAGTTCTGACCATGGA
CCAGCTGGGCATGGGTCAGGTGTTCAAAGATCTGGCGAAGATTCCACGCGGTATCGTATTGGTTACCGGCCCGACCGGTT
CCGGTAAATCGACCACGCTGGCGGCGATGATCGACTATATCAACGAAAGCAAATACGACCACATCCTCACCGTGGAAGAC
CCGATCGAATTCGTACACGAATCGAAAAAATCGCTGGTTAACCAGCGTGAAGTTCACCGTGACACCTTAGGCTTTAACGA
AGCACTGCGTTCGGCGCTGCGTGAAGACCCGGATGTGATTCTGGTGGGTGAGATGCGTGACCTTGAAACCATCCGTCTGG
CGCTGACCGCGGCAGAAACCGGTCATATTGTATTCGGCACCCTGCACACCAGCTCGGCGGCAAAAACCATCGACCGTATC
GTCGACGTATTCCCGGCGGAAGAAAAATCCATGGTGCGCTCCATGCTGTCGGAATCTTTGCAGGGGGTTATTTCCCAGAC
TCTGCTGAAGAAGAATGGCGGCGGCCGGGTTGCGGCCCACGAAATCATGGTGGGTACACCGGCCATCCGTAACCTGATCC
GTGAAGATAAAATTGCCCAGATGTATTCGGCCATTCAGACCGGTTCGGCTTACGGTATGCAGACCATGGATCAGTGCCTG
CAGAACCTGTTGAACAAAGGTCTGATCAGCCGGGATGTGGCGCGTGAAAAAGCCAAAATCCCGGATAATTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
86.919 |
100 |
0.869 |
| pilT | Pseudomonas stutzeri DSM 10701 |
86.628 |
100 |
0.866 |
| pilT | Acinetobacter nosocomialis M2 |
82.849 |
100 |
0.828 |
| pilT | Acinetobacter baumannii D1279779 |
82.849 |
100 |
0.828 |
| pilT | Acinetobacter baumannii strain A118 |
82.849 |
100 |
0.828 |
| pilT | Acinetobacter baylyi ADP1 |
79.651 |
100 |
0.797 |
| pilT | Legionella pneumophila strain Lp02 |
75.444 |
98.256 |
0.741 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.444 |
98.256 |
0.741 |
| pilT | Neisseria meningitidis 8013 |
69.412 |
98.837 |
0.686 |
| pilT | Neisseria gonorrhoeae MS11 |
68.824 |
98.837 |
0.68 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
66.471 |
98.837 |
0.657 |
| pilT | Vibrio cholerae strain A1552 |
66.471 |
98.837 |
0.657 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.333 |
100 |
0.535 |
| pilU | Vibrio cholerae strain A1552 |
41.692 |
96.221 |
0.401 |
| pilU | Acinetobacter baylyi ADP1 |
39.306 |
100 |
0.395 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40 |
97.384 |
0.39 |