Detailed information
Bioinformatically predicted
Overview
| Name | comR/comR2 | Type | Regulator |
| Locus tag | SITYG_RS00080 | Genome accession | NZ_AP014880 |
| Coordinates | 18940..19413 (+) | Length | 157 a.a. |
| NCBI ID | WP_096362333.1 | Uniprot ID | - |
| Organism | Streptococcus intermedius strain TYG1620 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 203..47563 | 18940..19413 | within | 0 |
Gene organization within MGE regions
Location: 203..47563
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SITYG_RS00005 (SITYG_00010) | dnaA | 203..1546 (+) | 1344 | WP_096362325.1 | chromosomal replication initiator protein DnaA | - |
| SITYG_RS00010 (SITYG_00020) | dnaN | 1702..2838 (+) | 1137 | WP_003075500.1 | DNA polymerase III subunit beta | - |
| SITYG_RS00015 (SITYG_00030) | - | 2838..3035 (+) | 198 | WP_003075608.1 | DUF951 domain-containing protein | - |
| SITYG_RS00020 (SITYG_00040) | - | 3058..3558 (-) | 501 | WP_003075599.1 | DUF1307 domain-containing protein | - |
| SITYG_RS00025 (SITYG_00050) | ychF | 3704..4819 (+) | 1116 | WP_096362326.1 | redox-regulated ATPase YchF | - |
| SITYG_RS00030 (SITYG_00060) | pth | 4891..5460 (+) | 570 | WP_021002259.1 | aminoacyl-tRNA hydrolase | - |
| SITYG_RS00035 (SITYG_00070) | mfd | 5453..8959 (+) | 3507 | WP_096362327.1 | transcription-repair coupling factor | - |
| SITYG_RS00040 (SITYG_00080) | - | 9039..9305 (+) | 267 | WP_096362328.1 | RNA-binding S4 domain-containing protein | - |
| SITYG_RS00045 (SITYG_00090) | - | 9298..9666 (+) | 369 | WP_003075514.1 | septum formation initiator family protein | - |
| SITYG_RS10725 (SITYG_00100) | - | 9669..9797 (+) | 129 | WP_096362329.1 | SP_0009 family protein | - |
| SITYG_RS00055 (SITYG_00110) | - | 9790..11070 (+) | 1281 | WP_096362330.1 | serine hydrolase | - |
| SITYG_RS00060 (SITYG_00120) | tilS | 11067..12344 (+) | 1278 | WP_009569755.1 | tRNA lysidine(34) synthetase TilS | - |
| SITYG_RS00065 (SITYG_00130) | hpt | 12350..12892 (+) | 543 | WP_096362331.1 | hypoxanthine phosphoribosyltransferase | - |
| SITYG_RS00070 (SITYG_00140) | ftsH | 12913..14883 (+) | 1971 | WP_003075525.1 | ATP-dependent zinc metalloprotease FtsH | - |
| SITYG_RS00075 (SITYG_00150) | - | 15857..18619 (+) | 2763 | WP_096362332.1 | sialidase domain-containing protein | - |
| SITYG_RS00080 (SITYG_00160) | comR/comR2 | 18940..19413 (+) | 474 | WP_096362333.1 | transcriptional regulator | Regulator |
| SITYG_RS00190 (SITYG_00170) | mreC | 26375..27181 (+) | 807 | WP_096362334.1 | rod shape-determining protein MreC | - |
| SITYG_RS00195 (SITYG_00180) | mreD | 27183..27683 (+) | 501 | WP_003075140.1 | rod shape-determining protein MreD | - |
| SITYG_RS00200 (SITYG_00190) | pcsB | 27793..28974 (+) | 1182 | WP_003077627.1 | peptidoglycan hydrolase PcsB | - |
| SITYG_RS00205 (SITYG_00200) | - | 29108..30076 (+) | 969 | WP_048785444.1 | ribose-phosphate diphosphokinase | - |
| SITYG_RS00210 (SITYG_00210) | - | 30240..31427 (+) | 1188 | WP_009567704.1 | pyridoxal phosphate-dependent aminotransferase | - |
| SITYG_RS00215 (SITYG_00220) | recO | 31405..32178 (+) | 774 | WP_096362335.1 | DNA repair protein RecO | - |
| SITYG_RS00220 (SITYG_00230) | plsX | 32175..33173 (+) | 999 | WP_096362336.1 | phosphate acyltransferase PlsX | - |
| SITYG_RS00225 (SITYG_00240) | - | 33170..33415 (+) | 246 | WP_003075134.1 | acyl carrier protein | - |
| SITYG_RS00230 (SITYG_00250) | purC | 33560..34267 (+) | 708 | WP_096362337.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| SITYG_RS00235 (SITYG_00260) | - | 34277..38002 (+) | 3726 | WP_096362338.1 | phosphoribosylformylglycinamidine synthase | - |
| SITYG_RS00240 (SITYG_00270) | - | 38024..38644 (+) | 621 | WP_096362339.1 | DNA alkylation repair protein | - |
| SITYG_RS00245 (SITYG_00280) | purF | 38670..40109 (+) | 1440 | WP_096362340.1 | amidophosphoribosyltransferase | - |
| SITYG_RS00250 (SITYG_00290) | purM | 40356..41378 (+) | 1023 | WP_096363309.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| SITYG_RS00255 (SITYG_00300) | purN | 41378..41935 (+) | 558 | WP_096362341.1 | phosphoribosylglycinamide formyltransferase | - |
| SITYG_RS00260 (SITYG_00310) | - | 41968..42867 (+) | 900 | WP_096362342.1 | exonuclease domain-containing protein | - |
| SITYG_RS00270 (SITYG_00320) | purH | 43203..44753 (+) | 1551 | WP_096362343.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| SITYG_RS00275 (SITYG_00330) | - | 44805..46727 (-) | 1923 | WP_096362344.1 | GBS Bsp-like repeat-containing protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 19402.35 Da Isoelectric Point: 8.9104
>NTDB_id=67231 SITYG_RS00080 WP_096362333.1 18940..19413(+) (comR/comR2) [Streptococcus intermedius strain TYG1620]
MDFKELYEKVRGIVLKSRREYYVHLWELSDWDQEGMMVLYELVSRHPYLVEEEAHLYVYYKTKFRNHIKDILRKQESQKR
KLDRQVYEEVSEIGHKLSLKGLYLDELVILRDQLKSYQKQLSPAKQEQYERLLADERFKGRQAMLRELRTYLKDYEM
MDFKELYEKVRGIVLKSRREYYVHLWELSDWDQEGMMVLYELVSRHPYLVEEEAHLYVYYKTKFRNHIKDILRKQESQKR
KLDRQVYEEVSEIGHKLSLKGLYLDELVILRDQLKSYQKQLSPAKQEQYERLLADERFKGRQAMLRELRTYLKDYEM
Nucleotide
Download Length: 474 bp
>NTDB_id=67231 SITYG_RS00080 WP_096362333.1 18940..19413(+) (comR/comR2) [Streptococcus intermedius strain TYG1620]
ATGGATTTCAAGGAGTTATATGAGAAAGTAAGGGGAATTGTGCTGAAGAGTCGACGGGAATATTATGTCCATCTGTGGGA
GCTAAGCGATTGGGACCAAGAAGGGATGATGGTCTTGTATGAGTTGGTAAGTCGCCACCCCTATTTGGTAGAGGAAGAAG
CCCATCTCTATGTCTACTATAAGACAAAGTTTCGGAATCACATAAAGGATATTCTGCGCAAACAAGAAAGTCAAAAGCGC
AAACTGGATCGCCAAGTGTATGAAGAGGTAAGTGAGATTGGGCACAAGTTAAGTCTGAAAGGTCTGTATCTAGACGAGTT
GGTAATACTCCGCGATCAATTAAAGTCCTATCAAAAGCAACTGAGTCCCGCCAAGCAAGAGCAGTATGAGCGGTTACTGG
CAGATGAAAGGTTCAAAGGCCGCCAAGCGATGCTTCGAGAGTTACGAACCTACTTAAAAGACTATGAGATGTAG
ATGGATTTCAAGGAGTTATATGAGAAAGTAAGGGGAATTGTGCTGAAGAGTCGACGGGAATATTATGTCCATCTGTGGGA
GCTAAGCGATTGGGACCAAGAAGGGATGATGGTCTTGTATGAGTTGGTAAGTCGCCACCCCTATTTGGTAGAGGAAGAAG
CCCATCTCTATGTCTACTATAAGACAAAGTTTCGGAATCACATAAAGGATATTCTGCGCAAACAAGAAAGTCAAAAGCGC
AAACTGGATCGCCAAGTGTATGAAGAGGTAAGTGAGATTGGGCACAAGTTAAGTCTGAAAGGTCTGTATCTAGACGAGTT
GGTAATACTCCGCGATCAATTAAAGTCCTATCAAAAGCAACTGAGTCCCGCCAAGCAAGAGCAGTATGAGCGGTTACTGG
CAGATGAAAGGTTCAAAGGCCGCCAAGCGATGCTTCGAGAGTTACGAACCTACTTAAAAGACTATGAGATGTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.