Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHU31_RS13075 Genome accession   NZ_CP108259
Coordinates   2873651..2875384 (+) Length   577 a.a.
NCBI ID   WP_030925847.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00055     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868651..2880384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU31_RS13045 (OHU31_13060) - 2870097..2870297 (-) 201 WP_037822815.1 hypothetical protein -
  OHU31_RS13065 (OHU31_13080) - 2871669..2871974 (+) 306 WP_030925852.1 hypothetical protein -
  OHU31_RS13070 (OHU31_13085) - 2872035..2873480 (+) 1446 WP_030925849.1 FGGY family carbohydrate kinase -
  OHU31_RS13075 (OHU31_13090) rcrP 2873651..2875384 (+) 1734 WP_030925847.1 ABC transporter ATP-binding protein Regulator
  OHU31_RS13080 (OHU31_13095) rcrQ 2875384..2877309 (+) 1926 WP_030925845.1 ABC transporter ATP-binding protein Regulator
  OHU31_RS13085 (OHU31_13100) - 2877326..2878453 (-) 1128 WP_327423463.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62827.83 Da        Isoelectric Point: 5.3847

>NTDB_id=657538 OHU31_RS13075 WP_030925847.1 2873651..2875384(+) (rcrP) [Streptomyces sp. NBC_00055]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILQYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEAVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPSLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=657538 OHU31_RS13075 WP_030925847.1 2873651..2875384(+) (rcrP) [Streptomyces sp. NBC_00055]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGCAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCGGCCGCACTGGGCCGGGACGTGCGGGCGTCGGTCTTCGACCGCGTCCAGTCGTTCTCGGCACGCGAGGTCGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGATTCCGCGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGCCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGGCGGTGCGGGAGCTGCGCGCTCACGGCCATCTGGAGGTGCGGGCTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGATCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTGCCGCGGCTCTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGTCGCTGCTGGCGAGGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTGCAACGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCGCTGCGCCGGGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.271

100

0.412