Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   L2Z07_RS18685 Genome accession   NZ_CP091367
Coordinates   3889945..3890982 (-) Length   345 a.a.
NCBI ID   WP_225488298.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB169-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3884945..3895982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z07_RS18655 (L2Z07_18650) - 3885729..3886184 (+) 456 WP_000782976.1 bacteriohemerythrin -
  L2Z07_RS18660 (L2Z07_18655) - 3886337..3887404 (+) 1068 WP_000092403.1 hypothetical protein -
  L2Z07_RS18665 (L2Z07_18660) - 3887404..3887727 (+) 324 WP_000442585.1 RnfH family protein -
  L2Z07_RS18670 (L2Z07_18665) bamE 3887782..3888180 (-) 399 WP_001170994.1 outer membrane protein assembly factor BamE -
  L2Z07_RS18675 (L2Z07_18670) fur 3888292..3888729 (+) 438 WP_001122847.1 ferric iron uptake transcriptional regulator -
  L2Z07_RS18680 (L2Z07_18675) pilU 3888799..3889917 (-) 1119 WP_000347036.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  L2Z07_RS18685 (L2Z07_18680) pilT 3889945..3890982 (-) 1038 WP_225488298.1 type IV pilus twitching motility protein PilT Machinery gene
  L2Z07_RS18690 (L2Z07_18685) - 3891109..3891801 (+) 693 WP_001108506.1 YggS family pyridoxal phosphate-dependent enzyme -
  L2Z07_RS18695 (L2Z07_18690) - 3892003..3895599 (-) 3597 WP_000698791.1 AAA family ATPase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38267.88 Da        Isoelectric Point: 6.8886

>NTDB_id=650615 L2Z07_RS18685 WP_225488298.1 3889945..3890982(-) (pilT) [Acinetobacter baumannii strain AB169-VUB]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICGYPRGIVLVTGPTGSGKSTTLAAMLDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQNGANHGMTTLDQSL
KGLVARGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=650615 L2Z07_RS18685 WP_225488298.1 3889945..3890982(-) (pilT) [Acinetobacter baumannii strain AB169-VUB]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACATCTCTCTGCTGGCATGCCACCAAT
GATTCGTGTTGACGGTGAAGTTCGTCGTATTAACTTACCAGCTCTAGAACATAAAGATGTCCACCGTCTTGTTTACGACA
TCATGAATGATAAACAGCGCCGTGACTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCTAACGTTGCGCGT
TTCCGTGTTAACGCATTTAACCAAAACCGTGGTGCTGGTGCAGTCTTTCGTACCATTCCATCTAAAGTCCTCACCATGGA
AGATCTAGGTTTAGGGCAAATCTTTAAAGATATTTGCGGCTATCCTCGCGGCATTGTACTGGTGACGGGACCAACAGGTT
CGGGTAAATCAACTACGCTTGCAGCGATGCTCGATTATATTAACGAAAACCGCTATGACCATATTTTAACGGTGGAAGAT
CCAATCGAATTTGTACACCAGTCTAAGAAATGTCTCATTAACCAGCGTGAAGTGCATCGTGACACACACGGCTTTAATGA
AGCCCTTCGCTCAGCACTGCGTGAAGACCCTGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAAACCATTCGCTTGG
CATTAACCGCTGCCGAAACAGGTCACTTGGTGTTTGGTACACTCCACACCACGTCAGCTGCAAAAACTATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCAGAATCTTTACAAGCGGTTATTTCACAAAC
CCTGCTTAAAAAGAATGGTGGTGGCCGTGTCGCAGCGCATGAGATCATGATTGGTATTCCGGCTATTCGTAACTTAATTC
GTGAAAACAAAGTCGCGCAAATGTACTCAGCCATTCAAAATGGTGCCAATCATGGCATGACCACACTCGACCAAAGTTTA
AAAGGCTTAGTCGCTCGCGGTGTAATTAGCCCGCAAACGGCTCGTACTGCAGCAAAACAGCCTGAATCATTCTTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii strain A118

99.42

100

0.994
  pilT Acinetobacter baumannii D1279779

99.42

100

0.994
  pilT Acinetobacter nosocomialis M2

99.13

100

0.991
  pilT Acinetobacter baylyi ADP1

88.372

99.71

0.881
  pilT Pseudomonas aeruginosa PAK

83.721

99.71

0.835
  pilT Pseudomonas stutzeri DSM 10701

83.43

99.71

0.832
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.429

97.391

0.696
  pilT Vibrio cholerae strain A1552

71.429

97.391

0.696
  pilT Neisseria meningitidis 8013

67.826

100

0.678
  pilT Neisseria gonorrhoeae MS11

67.536

100

0.675
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.884

100

0.519
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.101

0.394
  pilU Acinetobacter baylyi ADP1

38.728

100

0.388